View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21040_low_2 (Length: 715)
Name: NF21040_low_2
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_low_2 |
 | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
| [»] scaffold1155 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 321 - 700
Target Start/End: Original strand, 18314330 - 18314708
Alignment:
| Q |
321 |
atagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaagcatagga |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18314330 |
atagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatgtacctagaagcatagga |
18314429 |
T |
|
| Q |
421 |
taataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgatgca |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18314430 |
taataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaggattttcatctttctgtttttcttcgtgatgca |
18314529 |
T |
|
| Q |
521 |
atacctcacgtgctatgaagatgacctcaacacgatcctctgtcaaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccacc |
620 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
18314530 |
atacctcacgtgctatgaa-atgacctcaacacgatcctctgtcaaatctctcttttcccattgaaactcaaatgactcgatctctcctgtcaacccacc |
18314628 |
T |
|
| Q |
621 |
attcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctct |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
18314629 |
attcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttcttacattcaatctct |
18314708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 18314110 - 18314200
Alignment:
| Q |
17 |
ggaccttcacttggatgaacaaagtacactgaatcttgattagcttgttgaatctgaacaaccggagcaacacgaggaggcattgtgatgt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
18314110 |
ggaccttcacttggatgaacaaagtaccctgaatcctgattagcttgttgaatctggacaaccggagcaacatgaggaggcattgtgatgt |
18314200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 673
Target Start/End: Original strand, 17635591 - 17635699
Alignment:
| Q |
565 |
aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac |
664 |
Q |
| |
|
||||||||| ||| |||| |||||||| ||||||| |||| ||| | || ||||||||| | ||||| ||||||| |||||| | ||||||||||| |
|
|
| T |
17635591 |
aaatctctccttttccattgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaac |
17635690 |
T |
|
| Q |
665 |
tttgacctc |
673 |
Q |
| |
|
||||||||| |
|
|
| T |
17635691 |
tttgacctc |
17635699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 686
Target Start/End: Original strand, 18318652 - 18318699
Alignment:
| Q |
639 |
cgagttttctctcaaaatattacaactttgacctcactctcatgttct |
686 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
18318652 |
cgagttttctgcaaaaatattacaactttgacctcactcacatgttct |
18318699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 670
Target Start/End: Original strand, 34935986 - 34936027
Alignment:
| Q |
629 |
aaatggcttacgagttttctctcaaaatattacaactttgac |
670 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
34935986 |
aaatggtttgcgagttttctcacaaaatattacaactttgac |
34936027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 219 - 523
Target Start/End: Original strand, 8368196 - 8368505
Alignment:
| Q |
219 |
ctcaagcatcaatggcggaaaatgtgtaactgaatcgtaactaactctctctct--aagagagagaaaaaggct-ctgataccatattatgaaaagtgaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
8368196 |
ctcaagcatcaatggcggaaaatgtgtaactgaaccgtaactaactctctctctctaagagagagaaaaaggaaactgataccatattatgagaagtgaa |
8368295 |
T |
|
| Q |
316 |
atggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaagca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
8368296 |
atggaatagaaattatgattctcattgattgaattagcttgtacaaccgttatttataggttgttataacctcatgcctactaacatgtacctagaagca |
8368395 |
T |
|
| Q |
416 |
taggataataactctgtaactaac--taaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcg |
513 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8368396 |
taggataataactctgtaactaactataaactattctaagctagttactagccagacaagctattacactttaggattttcatctttctgtttttcttcg |
8368495 |
T |
|
| Q |
514 |
tgatgcaata |
523 |
Q |
| |
|
|||||||||| |
|
|
| T |
8368496 |
tgatgcaata |
8368505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 8367983 - 8368073
Alignment:
| Q |
17 |
ggaccttcacttggatgaacaaagtacactgaatcttgattagcttgttgaatctgaacaaccggagcaacacgaggaggcattgtgatgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
8367983 |
ggaccttcacttggatgaacaaagtatactgaatttttattagcttgttgaatctgaacaaccggagcagcacgaggagtcattgcgatgt |
8368073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 673
Target Start/End: Original strand, 10169003 - 10169093
Alignment:
| Q |
583 |
agaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc |
673 |
Q |
| |
|
||||||||| |||||||||| | |||| | | |||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |
|
|
| T |
10169003 |
agaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctc |
10169093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 673
Target Start/End: Original strand, 10176528 - 10176618
Alignment:
| Q |
583 |
agaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc |
673 |
Q |
| |
|
||||||||| |||||||||| | |||| | | |||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |
|
|
| T |
10176528 |
agaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctc |
10176618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 622 - 673
Target Start/End: Complemental strand, 10615777 - 10615726
Alignment:
| Q |
622 |
ttcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc |
673 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
10615777 |
ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctc |
10615726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 686
Target Start/End: Complemental strand, 7977918 - 7977873
Alignment:
| Q |
641 |
agttttctctcaaaatattacaactttgacctcactctcatgttct |
686 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
7977918 |
agttttctcccaaaatattgcaactttgacctcactcaaatgttct |
7977873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 15091527 - 15091568
Alignment:
| Q |
558 |
ctctgtcaaatctctcttttcccatagaaactcaaatcactc |
599 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
15091527 |
ctctgtcaaatctcaattttcccattgaaactcaaatcactc |
15091568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 219 - 523
Target Start/End: Original strand, 9849173 - 9849478
Alignment:
| Q |
219 |
ctcaagcatcaatggcggaaaatgtgtaactgaatcgtaactaactctctctctaagagagagaaaaaggct-ctgataccatattatgaaaagtgaaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9849173 |
ctcaagcatcaatggcggaaaatgtgtaactgaatcgtaactgattctctctctaagagagagaaaaataaaactgataccatattatgaaaagtgaaat |
9849272 |
T |
|
| Q |
318 |
ggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaagcata |
417 |
Q |
| |
|
||||||||| ||||||||||||| | | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9849273 |
ggaatagaagatatgattctcattactggtatttgcttgtacaacagttatttataggttgttataacctcatgcttactaacatgtacctagaagcata |
9849372 |
T |
|
| Q |
418 |
ggataataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9849373 |
ggataataactctgtaactaactaaactattctaagttagttatttgtcatacaaactattacactttaggattttcatctttctgtttttcttcgtgat |
9849472 |
T |
|
| Q |
518 |
gcaata |
523 |
Q |
| |
|
|||||| |
|
|
| T |
9849473 |
gcaata |
9849478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 300 - 443
Target Start/End: Original strand, 9843129 - 9843272
Alignment:
| Q |
300 |
tattatgaaaagtgaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | | ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9843129 |
tattatgaaaagtgaaatggaatagaagatatgattctcattactggtatttgcttgtacaacagttatttataggttgttataacctcatgcttactaa |
9843228 |
T |
|
| Q |
400 |
catatacctagaagcataggataataactctgtaactaactaaa |
443 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9843229 |
catgtacctagaagcataggataataactctgtaactaactaaa |
9843272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 313 - 464
Target Start/End: Complemental strand, 40280576 - 40280424
Alignment:
| Q |
313 |
gaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaa |
412 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| |||||||| ||| |||||||| ||||||||| || |||||| |||||||| |||||||| |
|
|
| T |
40280576 |
gaaatggaatggaaaatatgattctcattgattgaataagcttgtataacaagtatttataagttgttatatccacatgctaactaacatgaacctagaa |
40280477 |
T |
|
| Q |
413 |
gcataggataataactctgtaactaact-aaactattctaagctagttacttg |
464 |
Q |
| |
|
|||||||| || |||| |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
40280476 |
gcataggaacattactcagtaactaactaaaactaatctaagctagttacttg |
40280424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 9848958 - 9849049
Alignment:
| Q |
16 |
aggaccttcacttggatgaacaaagtacactgaatcttgattagcttgttgaatctgaacaaccggagcaacacgaggaggcattgtgatgt |
107 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9848958 |
aggaccttcacttgcatgaacaaaatagactgaatcctgattagcttgttgaatctgaacaataggagcaacacgaggaggcattgtgatgt |
9849049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 438 - 523
Target Start/End: Original strand, 9844638 - 9844723
Alignment:
| Q |
438 |
actaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgatgcaata |
523 |
Q |
| |
|
|||||||||||||||| |||||| |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9844638 |
actaaactattctaagttagttatttgtcatacaaactattacactttaggattttcatctttctgtttttcttcgtgatgcaata |
9844723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 1e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 300 - 523
Target Start/End: Original strand, 25189541 - 25189764
Alignment:
| Q |
300 |
tattatgaaaagtgaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | | ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25189541 |
tattatgaaaagtgaaatggaatagaagatatgattctcattactggtatttgcttgtacaacagttatttataggttgttataacctcatgcttactaa |
25189640 |
T |
|
| Q |
400 |
catatacctagaagcataggataataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctt |
499 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
25189641 |
catgtacctagaagcataggataataactctgtaactaactaaactattctaagttagttatttgtcatacaaactattacactttaggattttcatctt |
25189740 |
T |
|
| Q |
500 |
tctgtttttcttcgtgatgcaata |
523 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
25189741 |
tctgtttttcttcgtgatgcaata |
25189764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 617 - 673
Target Start/End: Original strand, 19467418 - 19467474
Alignment:
| Q |
617 |
caccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc |
673 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19467418 |
caccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctc |
19467474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 524
Target Start/End: Original strand, 27487938 - 27488149
Alignment:
| Q |
313 |
gaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaa |
412 |
Q |
| |
|
|||||| ||| |||| || |||| ||||||||||||| ||||||||||||| |||||||| | | || | ||| ||||||| |||||| |||||| || |
|
|
| T |
27487938 |
gaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagctactagatccttatgcttattaacatgtaccta-aa |
27488036 |
T |
|
| Q |
413 |
gcataggataataactc-tgtaactaact-aaactattctaagctagttacttgtcag-acaagctattacactttaagattttcatctttctgtttttc |
509 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||| | ||| ||||||||| ||| |||| ||||||| || || ||| ||||||||| ||||| |
|
|
| T |
27488037 |
gcatagaataataactcttgtaactaactgaaactaacttgagcaagttacttg-cagtgcaagttattacaattagaggtttcaatctttctg-ttttc |
27488134 |
T |
|
| Q |
510 |
ttcgtgatgcaatac |
524 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27488135 |
ttcgtgatgcaatac |
27488149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 313 - 439
Target Start/End: Original strand, 27480586 - 27480712
Alignment:
| Q |
313 |
gaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaa |
412 |
Q |
| |
|
|||||| ||| |||| || |||| ||||||||||||| ||||||||||||| |||||||| | | || | ||| ||||||| |||||| |||||| || |
|
|
| T |
27480586 |
gaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagctactagatccttatgcttattaacatgtaccta-aa |
27480684 |
T |
|
| Q |
413 |
gcataggataataactct-gtaactaac |
439 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |
|
|
| T |
27480685 |
gcatagaataataactctagtaactaac |
27480712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 677
Target Start/End: Complemental strand, 7555270 - 7555207
Alignment:
| Q |
614 |
acccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactc |
677 |
Q |
| |
|
||||||||| || |||| ||| || |||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
7555270 |
acccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactc |
7555207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 368 - 481
Target Start/End: Original strand, 23871996 - 23872109
Alignment:
| Q |
368 |
tttataggttgttataacctcatgcttactaacatatacctagaagcataggataataactctgtaactaactaaactattctaagctagttacttgtca |
467 |
Q |
| |
|
|||||| ||||||||| || |||||| |||||||| ||||||||| ||||||| | ||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
23871996 |
tttataagttgttatacccacatgctaactaacatgaacctagaagtataggattacaactcagtaactaactaaactaatctaagctagttacttgtac |
23872095 |
T |
|
| Q |
468 |
gacaagctattaca |
481 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
23872096 |
ggcaagctattaca |
23872109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 614 - 685
Target Start/End: Original strand, 8186343 - 8186414
Alignment:
| Q |
614 |
acccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttc |
685 |
Q |
| |
|
|||||||||||| |||||||| || |||||| |||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
8186343 |
acccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttc |
8186414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 579 - 673
Target Start/End: Complemental strand, 553866 - 553772
Alignment:
| Q |
579 |
ccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc |
673 |
Q |
| |
|
|||| ||| |||| |||||||||||||||| ||||||||||||||||||||| || |||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
553866 |
ccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctc |
553772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 23871580 - 23871629
Alignment:
| Q |
313 |
gaaatggaatagaaattatgattctcattgattgaattagcttgtacaac |
362 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
23871580 |
gaaatagaatggaaaatatgattctcattgattgaataagcttgtacaac |
23871629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 673
Target Start/End: Complemental strand, 661928 - 661871
Alignment:
| Q |
616 |
ccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc |
673 |
Q |
| |
|
||||||||||||| ||||| || |||| |||||| ||| ||||||||||||| ||||| |
|
|
| T |
661928 |
ccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctc |
661871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 685
Target Start/End: Complemental strand, 1755595 - 1755554
Alignment:
| Q |
644 |
tttctctcaaaatattacaactttgacctcactctcatgttc |
685 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
1755595 |
tttctctcaaaagattacaactttgacctctctcacatgttc |
1755554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 685
Target Start/End: Original strand, 7225179 - 7225216
Alignment:
| Q |
648 |
tctcaaaatattacaactttgacctcactctcatgttc |
685 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
7225179 |
tctcaaaatattacaactttgacctctctcacatgttc |
7225216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 669
Target Start/End: Original strand, 55907677 - 55907714
Alignment:
| Q |
632 |
tggcttacgagttttctctcaaaatattacaactttga |
669 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
55907677 |
tggcttacgagctttctcccaaaatattacaactttga |
55907714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 94 - 163
Alignment:
| Q |
454 |
ctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgatgcaata |
523 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
94 |
ctagttatttgtcatacaaactattacactttaggattttcatctttctgtttttcttcgtgatgcaata |
163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 565 - 669
Target Start/End: Original strand, 1821 - 1925
Alignment:
| Q |
565 |
aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac |
664 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||||||| ||||||||| | ||||| ||||||||| |||| || |||||||| || |||||||||||||| |
|
|
| T |
1821 |
aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac |
1920 |
T |
|
| Q |
665 |
tttga |
669 |
Q |
| |
|
||||| |
|
|
| T |
1921 |
tttga |
1925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 565 - 669
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
| Q |
565 |
aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac |
664 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||||||| ||||||||| | ||||| ||||||||| |||| || |||||||| || |||||||||||||| |
|
|
| T |
8395 |
aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac |
8296 |
T |
|
| Q |
665 |
tttga |
669 |
Q |
| |
|
||||| |
|
|
| T |
8295 |
tttga |
8291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 565 - 669
Target Start/End: Original strand, 30584 - 30688
Alignment:
| Q |
565 |
aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac |
664 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||||||| ||||||||| | ||||| ||||||||| |||| || |||||||| || |||||||||||||| |
|
|
| T |
30584 |
aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac |
30683 |
T |
|
| Q |
665 |
tttga |
669 |
Q |
| |
|
||||| |
|
|
| T |
30684 |
tttga |
30688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 677
Target Start/End: Original strand, 51120590 - 51120703
Alignment:
| Q |
564 |
caaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaa |
663 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||| |||||||| |||||||| || || ||||| || |||| ||||||||||||| |||||| |
|
|
| T |
51120590 |
caaatatctcttttcccattgaaacttcgatcactccatctctccaacacacccaccaatcttgccaatggattgcgagctttctctcaaaatgttacaa |
51120689 |
T |
|
| Q |
664 |
ctttgacctcactc |
677 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
51120690 |
ctttgacttcactc |
51120703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 673
Target Start/End: Original strand, 6593923 - 6593974
Alignment:
| Q |
622 |
ttcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc |
673 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
6593923 |
ttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctc |
6593974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 4318421 - 4318375
Alignment:
| Q |
219 |
ctcaagcatcaatggcggaaaatgtgtaactgaatcgtaactaactct |
266 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
4318421 |
ctcaagcatcaatggcggaaag-gtgtaactgaatcgtaacaaactct |
4318375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 670
Target Start/End: Original strand, 1036613 - 1036651
Alignment:
| Q |
632 |
tggcttacgagttttctctcaaaatattacaactttgac |
670 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
1036613 |
tggcttacgagctttctcccaaaatattacaactttgac |
1036651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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