View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21040_low_20 (Length: 264)

Name: NF21040_low_20
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21040_low_20
NF21040_low_20
[»] chr6 (1 HSPs)
chr6 (1-198)||(15046858-15047055)
[»] chr3 (2 HSPs)
chr3 (79-128)||(51402732-51402781)
chr3 (55-115)||(25441495-25441555)
[»] chr7 (1 HSPs)
chr7 (79-116)||(45200198-45200235)
[»] chr2 (2 HSPs)
chr2 (79-120)||(28163928-28163969)
chr2 (79-115)||(22571884-22571920)
[»] chr8 (1 HSPs)
chr8 (58-126)||(11479635-11479703)
[»] chr5 (2 HSPs)
chr5 (55-111)||(979820-979876)
chr5 (63-115)||(19248485-19248537)
[»] chr1 (1 HSPs)
chr1 (79-115)||(13779584-13779620)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 15046858 - 15047055
Alignment:
Q  1 tatacattaatagatgatatagtagctatttatggacctactcttannnnnnnnggccggggtttgaaccctatacaatgcatgtattacgcattgtcta 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||        ||||||||||||||||| | ||||||||| ||||| ||||||||||    
T  15046858 tatacattaatagatgatatagtagctatttatggacctagtcttattttttt-ggccggggtttgaaccccagacaatgcatatattatgcattgtcta 15046956  T
Q  101 tatcaactgagctaaatttaggaggattactcttatatttaatcatcctgaaattgtgtaac-nnnnnnnncataaaatttcatacattcattctacac 198  Q
    |||||| | ||||||| | | |||||||||||||||||||||||||||| ||||||||||||         | ||||||||||||||||||||||||||    
T  15046957 tatcaattaagctaaactcacgaggattactcttatatttaatcatcctaaaattgtgtaacaaaaaaaaacctaaaatttcatacattcattctacac 15047055  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 51402732 - 51402781
Alignment:
Q  79 tgcatgtattacgcattgtctatatcaactgagctaaatttaggaggatt 128  Q
    ||||||||||| |||||||| ||||||||||||||||| ||| |||||||    
T  51402732 tgcatgtattatgcattgtccatatcaactgagctaaacttacgaggatt 51402781  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 25441495 - 25441555
Alignment:
Q  55 ggccggggtttgaaccctatacaatgcatgtattacgcattgtctatatcaactgagctaa 115  Q
    ||||||||||||||||| | ||  ||||| ||||| |||||||| ||| ||||||||||||    
T  25441495 ggccggggtttgaaccccagaccttgcatatattatgcattgtccataccaactgagctaa 25441555  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 45200235 - 45200198
Alignment:
Q  79 tgcatgtattacgcattgtctatatcaactgagctaaa 116  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  45200235 tgcatgtattatgcattgtccatatcaactgagctaaa 45200198  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 28163969 - 28163928
Alignment:
Q  79 tgcatgtattacgcattgtctatatcaactgagctaaattta 120  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  28163969 tgcatgtattatgcattgtccttatcaactgagctaaattta 28163928  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 22571884 - 22571920
Alignment:
Q  79 tgcatgtattacgcattgtctatatcaactgagctaa 115  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  22571884 tgcatatattatgcattgtctatatcaactgagctaa 22571920  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 11479635 - 11479703
Alignment:
Q  58 cggggtttgaaccctatacaatgcatgtattacgcattgtctatatcaactgagctaaatttaggagga 126  Q
    |||| ||||||||||| ||  ||||| | ||| |||||||||||| ||||||||||| ||||| |||||    
T  11479635 cgggatttgaaccctaaaccttgcatattttatgcattgtctataccaactgagctatatttacgagga 11479703  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 979820 - 979876
Alignment:
Q  55 ggccggggtttgaaccctatacaatgcatgtattacgcattgtctatatcaactgag 111  Q
    ||||||||||||||||||| ||  ||||| ||||| |||| |||| |||||||||||    
T  979820 ggccggggtttgaaccctagacgttgcatatattatgcatcgtctctatcaactgag 979876  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 19248537 - 19248485
Alignment:
Q  63 tttgaaccctatacaatgcatgtattacgcattgtctatatcaactgagctaa 115  Q
    ||||||||| | ||| ||||| ||||| |||||||||||| ||||||||||||    
T  19248537 tttgaaccccaaacattgcatatattatgcattgtctataccaactgagctaa 19248485  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 13779620 - 13779584
Alignment:
Q  79 tgcatgtattacgcattgtctatatcaactgagctaa 115  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  13779620 tgcatatattatgcattgtctatatcaactgagctaa 13779584  T

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