View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21040_low_21 (Length: 256)
Name: NF21040_low_21
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_low_21 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold0958 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0425 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8876 - 9116
Alignment:
| Q |
1 |
tgaagatttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgta |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8876 |
tgaagaattttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgtggatatggtcaactgggaggaatggatatgtgta |
8975 |
T |
|
| Q |
101 |
aggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
8976 |
aggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccctgcctcaacatcttccttctttacaaaaattgattatttatg |
9075 |
T |
|
| Q |
201 |
gttgcaaagagttggaggaatggttatgtcttgaagggttt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9076 |
gttgcaaagagttggaggaatggttatgtcttgaagggttt |
9116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 35)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6734602 - 6734362
Alignment:
| Q |
1 |
tgaagatttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgta |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734602 |
tgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgta |
6734503 |
T |
|
| Q |
101 |
aggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtg |
200 |
Q |
| |
|
||||||||| |||||| |||||||| |||| ||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734502 |
aggtttcctttgcttatagagctttctataacaaattgtcctaaactgaaaggcaccctgcctcaacatcttccttctttacaaaaattgaatattagtg |
6734403 |
T |
|
| Q |
201 |
gttgcaaagagttggaggaatggttatgtcttgaagggttt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734402 |
gttgcaaagagttggaggaatggttatgtcttgaagggttt |
6734362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6521516 - 6521748
Alignment:
| Q |
1 |
tgaagatttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521516 |
tgaagatttttatggcaataattcaacaattgttccattcaagtcccttcaatatttgagatttcaggatatggtcaactgggaggaatggatatgtgta |
6521615 |
T |
|
| Q |
101 |
aggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||| || |||| |
|
|
| T |
6521616 |
aggtttcctctgcttaaagagctttatataaaaaattgtcctaaattgaaaagcaccctgcctcaacacctttcttctttacaaaaattgaagatcagtg |
6521715 |
T |
|
| Q |
201 |
gttgcaaagagttggaggaatggttatgtcttg |
233 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||| |
|
|
| T |
6521716 |
attgcaacgagttggaggaattgttatgccttg |
6521748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 6781093 - 6781301
Alignment:
| Q |
33 |
ttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgtaaggtttcctctgcttaaagagctttatataga |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
6781093 |
ttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgtaaggtttcctttgcttatagagctttctataac |
6781192 |
T |
|
| Q |
133 |
aaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggttgcaaagagttggaggaatggttatgtctt |
232 |
Q |
| |
|
||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6781193 |
aaattgtcctaaactgaaaggcaccctgcctcaacatcttccttctttacaaaaattgaatattagtggttgcaaagagttggaggaatggttatgtctt |
6781292 |
T |
|
| Q |
233 |
gaagggttt |
241 |
Q |
| |
|
||||||||| |
|
|
| T |
6781293 |
gaagggttt |
6781301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 6555828 - 6556013
Alignment:
| Q |
1 |
tgaagatttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgta |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555828 |
tgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgta |
6555927 |
T |
|
| Q |
101 |
aggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaa |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
6555928 |
aggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagagtattgcctcaacatcttccatctttacaaaa |
6556013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 6528262 - 6528494
Alignment:
| Q |
1 |
tgaagatttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgta |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| || || ||||||| ||||||| ||||||||| ||||||||||| || |
|
|
| T |
6528262 |
tgaagatttttatgacaataattcaacaattgttccattcaagtcccttcaattttcgatatttgagaatatggtgaactgggagaaatggatatgtcta |
6528361 |
T |
|
| Q |
101 |
aggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtg |
200 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || | | |
|
|
| T |
6528362 |
aggtttcctttgcttaaagagctttctataagaaattgtcctaaattgaaaagcaccttgcctcaacagcttccttctttacaaaaattgtgcataaata |
6528461 |
T |
|
| Q |
201 |
gttgcaaagagttggaggaatggttatgtcttg |
233 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |
|
|
| T |
6528462 |
attgcaacaagttggaggaatggttatgccttg |
6528494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 6945900 - 6945728
Alignment:
| Q |
24 |
caacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatg---tgtaaggtttcctctgcttaaaga |
120 |
Q |
| |
|
|||||| |||||| |||| |||||||||| ||||| ||| ||| |||||||||| |||||||||||| | || || |||||||||| |||||||||| |
|
|
| T |
6945900 |
caacaaatgttccgttcaggtcccttgaagttttgaaattggagcatatggtcaattgggaggaatggttttgtcctgaaaggtttcctttgcttaaaga |
6945801 |
T |
|
| Q |
121 |
gctttatatagaaaattgtcctaaattgaaaagcacct---tacctcaacatcttccttctttacaaaaattg |
190 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||| |
|
|
| T |
6945800 |
gcttactataagaaattgtcccaaattgaaaagggccttgctgcctcaacaccttccttctttacaaaaattg |
6945728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 6730113 - 6730323
Alignment:
| Q |
11 |
tatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgt--aag-gtttc |
107 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||| |||||| |||| ||||||| | ||| || |||||||||||| ||| | | ||| ||||| |
|
|
| T |
6730113 |
tatggaaataattcaataattgttccattcaggtctcttgaagtattgaaatttgagcaattggagaattgggaggaatggttatttattgaagagtttc |
6730212 |
T |
|
| Q |
108 |
ctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggttgcaa |
207 |
Q |
| |
|
|||| |||||||||||| | ||| ||||||||| ||| ||||||| || | |||||||| |||||||||||| |||||||||| ||| | ||||||| |
|
|
| T |
6730213 |
ctctacttaaagagcttgaaataagaaattgtcccaaactgaaaagggccctgcctcaacaccttccttctttagaaaaattgaagattgtttgttgcaa |
6730312 |
T |
|
| Q |
208 |
agagttggagg |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
6730313 |
agagttggagg |
6730323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 6450185 - 6450395
Alignment:
| Q |
11 |
tatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgt--aag-gtttc |
107 |
Q |
| |
|
||||| |||||||||| |||||||||||||| || |||||| |||| ||||||| | ||| || |||||||||||| ||| | | ||| ||||| |
|
|
| T |
6450185 |
tatggaaataattcaataattgttccattcagatctcttgaagtattgaaatttgagcagttggagaattgggaggaatggttatttattgaagagtttc |
6450284 |
T |
|
| Q |
108 |
ctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggttgcaa |
207 |
Q |
| |
|
|||| |||||||||||| | ||| ||||||||| ||| ||||||| || | |||||||| |||||||||||| |||||||||| ||| | ||||||| |
|
|
| T |
6450285 |
ctctacttaaagagcttgaaataagaaattgtcccaaactgaaaagggccctgcctcaacaccttccttctttagaaaaattgaagattgtttgttgcaa |
6450384 |
T |
|
| Q |
208 |
agagttggagg |
218 |
Q |
| |
|
|||||||||| |
|
|
| T |
6450385 |
tgagttggagg |
6450395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 8470212 - 8470021
Alignment:
| Q |
1 |
tgaagatttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgt- |
99 |
Q |
| |
|
|||||| ||| ||||||| |||||||||| |||||| ||| |||||||||| ||||| ||||| | | ||| || |||||||||||| | ||| | |
|
|
| T |
8470212 |
tgaagagtttcatggcaacaattcaacaaatgttccgttcttgtcccttgaagttttgaaatttgtgaagatgaacagttgggaggaatggttgtgtctt |
8470113 |
T |
|
| Q |
100 |
--aaggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaatt |
189 |
Q |
| |
|
| |||||||| ||||||||||||||| |||| ||| ||||| |||||| |||| | || |||||||| |||||||||||||||||||| |
|
|
| T |
8470112 |
gaagggtttcctttgcttaaagagctttctataaaaagctgtcccgaattgagaagcgcattgcctcaacaccttccttctttacaaaaatt |
8470021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 5297237 - 5297180
Alignment:
| Q |
161 |
cctcaacatcttccttctttacaaaaattgaatattagtggttgcaaagagttggagg |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
5297237 |
cctcaacatcttccttctttgcaaaaattgaagattagtgattgccaagagttggagg |
5297180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 6840653 - 6840784
Alignment:
| Q |
105 |
ttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcacctt---acctcaacatcttccttctttacaaaaattgaatattagtgg |
201 |
Q |
| |
|
||||| ||||||||||| ||| |||| |||||| || ||||| ||||| |||| ||||||||| |||||||||||||||||| |||| ||| ||| |
|
|
| T |
6840653 |
ttcctttgcttaaagagatttctataagaaattgccccaaattaaaaagggccttgctacctcaacaccttccttctttacaaaaactgaagatttgtga |
6840752 |
T |
|
| Q |
202 |
ttgcaaagagttggaggaatggttatgtcttg |
233 |
Q |
| |
|
|||||| |||||||||||| |||||| |||| |
|
|
| T |
6840753 |
ttgcaacaagttggaggaattgttatgccttg |
6840784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 8453183 - 8453095
Alignment:
| Q |
102 |
ggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattg |
190 |
Q |
| |
|
|||||||| |||||||||||||||||||| | | ||||| |||||||||| || | |||||||| ||||||||||||||||||||| |
|
|
| T |
8453183 |
ggtttcctttgcttaaagagctttatataagagaatgtcccaaattgaaaatgtccctgcctcaacaccttccttctttacaaaaattg |
8453095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 6592840 - 6592947
Alignment:
| Q |
111 |
tgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggttgcaaaga |
210 |
Q |
| |
|
||||| ||||||||| |||| || ||||||| || |||||||| || | |||||||| ||||||||||| ||||||||| | |||| || |||| |||| |
|
|
| T |
6592840 |
tgcttcaagagctttgtataaaacattgtcccaagttgaaaagagccctgcctcaacaccttccttctttgcaaaaattggagattactgattgccaaga |
6592939 |
T |
|
| Q |
211 |
gttggagg |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
6592940 |
gttggagg |
6592947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 6840516 - 6840651
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggt |
202 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||| ||||||||||| | | || ||||| |||||||||||||||||| || || | || | |
|
|
| T |
6840516 |
gtttcctttgcttaaagagatttatatattcgattgtcccaaattgaaaagggctctgccacaacaccttccttctttacaaaaactgcatgtatttgat |
6840615 |
T |
|
| Q |
203 |
tgcaaagagttggaggaatggttatgtcttgaaggg |
238 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
6840616 |
tgcaacgagttggagaaatggttttgtcttgaaggg |
6840651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 6521888 - 6522018
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggt |
202 |
Q |
| |
|
||||||| ||||||||||| ||| |||| ||||||||| |||||||||| | | |||||||| |||||||||||||||||| || || | || | |
|
|
| T |
6521888 |
gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttctttacaaaaactggatgtatttgat |
6521987 |
T |
|
| Q |
203 |
tgcaaagagttggaggaatggttatgtcttg |
233 |
Q |
| |
|
||||| ||||||||||||| |||||| |||| |
|
|
| T |
6521988 |
tgcaacgagttggaggaattgttatgccttg |
6522018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 6522833 - 6522963
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggt |
202 |
Q |
| |
|
||||||| ||||||||||| ||| |||| ||||||||| |||||||||| | | |||||||| |||||||||||||||||| || || | || | |
|
|
| T |
6522833 |
gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttctttacaaaaactggatgtatttgat |
6522932 |
T |
|
| Q |
203 |
tgcaaagagttggaggaatggttatgtcttg |
233 |
Q |
| |
|
||||| ||||||||||||| |||||| |||| |
|
|
| T |
6522933 |
tgcaacgagttggaggaattgttatgccttg |
6522963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 6522968 - 6523064
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagt |
199 |
Q |
| |
|
||||||| ||||||||||| ||| |||| ||||||||| |||||||||| | | |||||||| |||||||||||||||||| |||| |||||| |
|
|
| T |
6522968 |
gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttctttacaaaaactgaagattagt |
6523064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 6915643 - 6915539
Alignment:
| Q |
111 |
tgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggttgcaaaga |
210 |
Q |
| |
|
||||| ||||||||| |||| || ||||||| || |||||||| || | |||||||| ||||||||||| ||||||||| | |||| || |||| |||| |
|
|
| T |
6915643 |
tgcttcaagagctttgtataaaacattgtcccaagttgaaaagttccctgcctcaacaccttccttctttgcaaaaattggagattattgattgccaaga |
6915544 |
T |
|
| Q |
211 |
gttgg |
215 |
Q |
| |
|
||||| |
|
|
| T |
6915543 |
gttgg |
6915539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 4390321 - 4390442
Alignment:
| Q |
31 |
tgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgt--aaggttt-cctctgcttaaagagctttat |
127 |
Q |
| |
|
||||||||||| || ||||||| |||| |||||||||| ||| ||| ||| |||||||| ||||||| ||||||| ||| ||||||||||||||| | |
|
|
| T |
4390321 |
tgttccattcaggttccttgaaattttgcgatttgaggacatgtccaattggaaggaatggttatgtgttgaaggtttccctttgcttaaagagctttct |
4390420 |
T |
|
| Q |
128 |
atagaaaattgtcctaaattga |
149 |
Q |
| |
|
||| |||||||| ||||||| |
|
|
| T |
4390421 |
atacgtaattgtccaaaattga |
4390442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 6481477 - 6481555
Alignment:
| Q |
112 |
gcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattg |
190 |
Q |
| |
|
||||||||||||| |||| || ||||||| ||||||||||| || | |||||||| |||||||||||||| |||||| |
|
|
| T |
6481477 |
gcttaaagagcttactataaaagattgtcccaaattgaaaagggcccttcctcaacaccttccttctttacagaaattg |
6481555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 6522293 - 6522423
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggt |
202 |
Q |
| |
|
||||||| ||||||||||| ||| |||| ||||||||| |||||||||| | | |||||||| |||||||||||||||||| || || | || | |
|
|
| T |
6522293 |
gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttctttacaaaaactggatgtatttgat |
6522392 |
T |
|
| Q |
203 |
tgcaaagagttggaggaatggttatgtcttg |
233 |
Q |
| |
|
||||| |||||| |||||| |||||| |||| |
|
|
| T |
6522393 |
tgcaacgagttgcaggaattgttatgccttg |
6522423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 6522563 - 6522693
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggt |
202 |
Q |
| |
|
||||||| ||||||||||| ||| |||| ||||||||| |||||||||| | | |||||||| |||||||||||||||||| || || | || | |
|
|
| T |
6522563 |
gtttcctttgcttaaagagatttctataacaaattgtcccgaattgaaaagggctctgcctcaacaccttccttctttacaaaaactggatgtatttgat |
6522662 |
T |
|
| Q |
203 |
tgcaaagagttggaggaatggttatgtcttg |
233 |
Q |
| |
|
||||| |||||| |||||| |||||| |||| |
|
|
| T |
6522663 |
tgcaacgagttgcaggaattgttatgccttg |
6522693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 8588457 - 8588273
Alignment:
| Q |
8 |
ttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgtgt---aaggt |
104 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||| ||| |||||| |||| |||| | |||| ||| ||||||||||||||||| | | ||| |
|
|
| T |
8588457 |
ttttacggaaataactcaacaattgttccattcaggtctcttgaagttttggaatttaaacggatggacaattgggaggaatggatatgccttcaagggt |
8588358 |
T |
|
| Q |
105 |
ttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaatt |
189 |
Q |
| |
|
||||| |||||||| |||| | |||| | |||||| |||||||||| | || |||||||| |||||||||||||||||||| |
|
|
| T |
8588357 |
ttcctttgcttaaaaagctatttataagtgaatgtcctgaattgaaaagggctttgcctcaacaccttccttctttacaaaaatt |
8588273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 7586419 - 7586338
Alignment:
| Q |
102 |
ggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttaca |
183 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||| ||||| || |||||||| | | |||||||| |||||||||||||| |
|
|
| T |
7586419 |
ggtttcctttgcttaaagagctttctataaaaaaatgtcccaagttgaaaagggctctgcctcaacaccttccttctttaca |
7586338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 6841059 - 6841143
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaa |
187 |
Q |
| |
|
||||||| ||||||||||| ||| |||| ||||||||| |||||||||| | | |||||||| |||||||||||||||||| |
|
|
| T |
6841059 |
gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttctttacaaaaa |
6841143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 7748537 - 7748441
Alignment:
| Q |
118 |
agagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggttgcaaagagttg |
214 |
Q |
| |
|
|||||||| |||| || ||||||| || |||||||| || | |||||||| ||||||||||| ||||||||| | |||| || |||| |||||||| |
|
|
| T |
7748537 |
agagctttgtataaaacattgtccgaagttgaaaagttccctgcctcaacaccttccttctttgcaaaaattggagattattgattgccaagagttg |
7748441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 6840924 - 6841007
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaa |
186 |
Q |
| |
|
||||||| ||||||||||| ||| |||| ||||||||| |||||||||| | | |||||||| ||||||||||||||||| |
|
|
| T |
6840924 |
gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcctcaacaccttccttctttacaaaa |
6841007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 6898630 - 6898527
Alignment:
| Q |
111 |
tgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggttgcaaaga |
210 |
Q |
| |
|
||||| ||||||||| ||| || ||||||| || |||||||| || | |||||||| ||||||||||| ||||| ||||| |||| || |||| |||| |
|
|
| T |
6898630 |
tgcttcaagagctttgtatcaaacattgtccgaagttgaaaagttccctgcctcaacaccttccttctttgcaaaagttgaaaattattgattgccaaga |
6898531 |
T |
|
| Q |
211 |
gttg |
214 |
Q |
| |
|
|||| |
|
|
| T |
6898530 |
gttg |
6898527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 6522023 - 6522153
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggt |
202 |
Q |
| |
|
||||||| ||||||||||| ||| |||| ||||||||| |||||||||| | | | |||||| |||||||||||||||||| || | ||| | | |
|
|
| T |
6522023 |
gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggctctgcatcaacaccttccttctttacaaaaactggagattcggaat |
6522122 |
T |
|
| Q |
203 |
tgcaaagagttggaggaatggttatgtcttg |
233 |
Q |
| |
|
||||| |||||||||||| |||||| |||| |
|
|
| T |
6522123 |
tgcaacaagttggaggaattgttatgccttg |
6522153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 6556065 - 6556195
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggt |
202 |
Q |
| |
|
||||||| ||||||||||| ||| ||| ||||||||| |||||||||| | | |||||||| |||||||||||||||||| || | | || | |
|
|
| T |
6556065 |
gtttcctttgcttaaagagtttttaataagaaattgtcccgaattgaaaagggctcttcctcaacaccttccttctttacaaaaactgggtgtatttgat |
6556164 |
T |
|
| Q |
203 |
tgcaaagagttggaggaatggttatgtcttg |
233 |
Q |
| |
|
||||| ||||||||||||| |||||| |||| |
|
|
| T |
6556165 |
tgcaacgagttggaggaattgttatgccttg |
6556195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 6236265 - 6236160
Alignment:
| Q |
113 |
cttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtggttgcaaagagt |
212 |
Q |
| |
|
||||||||||||| |||| || ||||||| || |||||||| | | |||||| | ||||||| ||| ||||||||| | |||| || |||| |||||| |
|
|
| T |
6236265 |
cttaaagagctttgtataaaacattgtcccaagttgaaaagtgacctgcctcaataccttccttgtttgcaaaaattggagattattgattgccaagagt |
6236166 |
T |
|
| Q |
213 |
tggagg |
218 |
Q |
| |
|
|||||| |
|
|
| T |
6236165 |
tggagg |
6236160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6486376 - 6486441
Alignment:
| Q |
1 |
tgaagatttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttga |
66 |
Q |
| |
|
|||||| ||||| | |||||||||||||||| ||||||| | |||||||||| ||||| |||||| |
|
|
| T |
6486376 |
tgaagaattttacgacaataattcaacaatttttccatttaggtcccttgaagttttgatatttga |
6486441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 7586521 - 7586472
Alignment:
| Q |
3 |
aagatttttatggcaataattcaacaattgttccattcaagtcccttgaa |
52 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
7586521 |
aagaattttatggcaataattccacaaatgttccattcagatcccttgaa |
7586472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 6528499 - 6528583
Alignment:
| Q |
103 |
gtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaa |
187 |
Q |
| |
|
||||||| ||||||||||| ||| |||| || |||||| |||||||||| | | |||||||| |||||||||||||||||| |
|
|
| T |
6528499 |
gtttcctttgcttaaagagatttctataacaagttgtcccgaattgaaaagggctctgcctcaacaccttccttctttacaaaaa |
6528583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 8570436 - 8570552
Alignment:
| Q |
102 |
ggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattagtgg |
201 |
Q |
| |
|
|||||||| |||||||| |||||| |||| | |||||| | ||||||||| || | |||| ||| |||||||||||||||||| || | || |||| |
|
|
| T |
8570436 |
ggtttcctttgcttaaaaagctttctataagatattgtcacagattgaaaagggccctgcctcgacaccttccttctttacaaaaactggagatcagtga |
8570535 |
T |
|
| Q |
202 |
ttgcaaagagttggagg |
218 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
8570536 |
ttgcaagaagttggagg |
8570552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 1274 - 1370
Alignment:
| Q |
102 |
ggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcaccttacctcaacatcttccttctttacaaaaattgaatattag |
198 |
Q |
| |
|
|||||||| |||||||| | |||| |||| | |||||| | ||||||||| || |||||| ||| |||||||||||||||| |||| ||||||| |
|
|
| T |
1274 |
ggtttcctttgcttaaaaatctttctataagatattgtcgcatattgaaaagggccctacctcgacaccttccttctttacaaatattggatattag |
1370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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