View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21040_low_22 (Length: 250)
Name: NF21040_low_22
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 21887537 - 21887298
Alignment:
| Q |
1 |
cgttcgaattataaaattgtgtcttgattcagttaacaaggttccaactcgagaatgtattcattcatcatagaagcagattctttcctgtgaaaatttc |
100 |
Q |
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| T |
21887537 |
cgttcgaattataaaattgtgtcttgactcagttaacaaggttccaactcgagaatgtattcattcatcatagaagcagattctttcctgtgaaaatttc |
21887438 |
T |
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| Q |
101 |
tgctctgataattttcttgttacttggacagttgttcaaggagtgtattctcggactccaaagtttgatggaagtaactattacattctcagtgttgaaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21887437 |
tgcactgataattttcttgttacttggacagttgttcaaggagtgtattctcggactccaaagtttgatggaagtaactattacattctcagtgttgaaa |
21887338 |
T |
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| Q |
201 |
atgtcgctaaattggtaaaatcatcatcagcaggcctatg |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
21887337 |
atgtcgctaaattggtaaaatcatcatcagcaggcttatg |
21887298 |
T |
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