View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21040_low_5 (Length: 484)
Name: NF21040_low_5
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_low_5 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 6555842 - 6555367
Alignment:
| Q |
1 |
ccataaaa-tcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacata |
99 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555842 |
ccataaaactcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacata |
6555743 |
T |
|
| Q |
100 |
acttacaacccttaaattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagctt |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555742 |
acttacaacccttaagttcaagagatactaagttgggtaaatgacaaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagctt |
6555643 |
T |
|
| Q |
200 |
cttcaagttgctatttggttttagagcctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttctata |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555642 |
cttcaagttgctatttggttttagagcctccaaaaccaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttctata |
6555543 |
T |
|
| Q |
300 |
tctttcaaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555542 |
tctttcaaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctt |
6555443 |
T |
|
| Q |
400 |
tgagatcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagctttcccatattctt |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555442 |
tgagatcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagctttcccatattctt |
6555367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 5 - 475
Target Start/End: Complemental strand, 6528271 - 6527801
Alignment:
| Q |
5 |
aaaatcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataactta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| | |
|
|
| T |
6528271 |
aaaatcttcatcaatgatctttattccttcacaatcataaacggaaagtttcttaagagaagggagttgtccaaggggtggcaaacaggaacataaccca |
6528172 |
T |
|
| Q |
105 |
caacccttaaattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttca |
204 |
Q |
| |
|
||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6528171 |
caaccattcagttgaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagcttcttca |
6528072 |
T |
|
| Q |
205 |
agttgctatttggttttagagcctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttctatatcttt |
304 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6528071 |
agttgctatttggttgtatagcctccaagactaacaggttgctttcagccatttcttctcttccgccattgaactcagtatgcaattcttctatatcttt |
6527972 |
T |
|
| Q |
305 |
caaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgaga |
404 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527971 |
caaatttaatggggcagcatctgcagtatcactgacattacccaagcctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgaga |
6527872 |
T |
|
| Q |
405 |
tcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagctttcccatattctt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527871 |
tcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagctttcccatattctt |
6527801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 5 - 475
Target Start/End: Complemental strand, 6521525 - 6521061
Alignment:
| Q |
5 |
aaaatcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataactta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6521525 |
aaaatcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacatc---ta |
6521429 |
T |
|
| Q |
105 |
caacccttaaattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttca |
204 |
Q |
| |
|
||| |||| | || |||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
6521428 |
caatccttcagttgaagagatactaagttgggtaaatgacaatcac---gccaatttggaaatctactacctttgtagcgtgtgatgttgagcttcttca |
6521332 |
T |
|
| Q |
205 |
agttgctatttggttttagagcctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttctatatcttt |
304 |
Q |
| |
|
|||||||||||| || || ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6521331 |
agttgctatttgattgtatagcctccaagactaacaggttgctttcagccatttcttctcttccgccattgaactctgtatgtaattcttctatatcttt |
6521232 |
T |
|
| Q |
305 |
caaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgaga |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521231 |
caaatttaatgtggcagcatctgcagtatcactaacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgaga |
6521132 |
T |
|
| Q |
405 |
tcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagctttcccatattctt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
6521131 |
tcagattcattatgggcttccacaataaaatatgacagggtctgaagattacttagctttcccatattctt |
6521061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 6734588 - 6735065
Alignment:
| Q |
1 |
ccataaaa-tcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacata |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6734588 |
ccataaaactcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtattggcaaacaggaacatc |
6734687 |
T |
|
| Q |
100 |
acttacaacccttaaattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagctt |
199 |
Q |
| |
|
||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6734688 |
---tacaaccattcagttcaagagatactaagttgcgtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtgatgttgagctt |
6734784 |
T |
|
| Q |
200 |
cttcaagttgctatttggttttagagcctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttcta-- |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
6734785 |
cttcaagttgctatttggttttagagcctccaagactaacacacttctttcatccatttcttctcttccgccattgaactccatttgtaattcttctaaa |
6734884 |
T |
|
| Q |
298 |
-------tatctttcaaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttg |
390 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6734885 |
tacttcttatctttcaaatttgatgtggcagcatctgcaggatcactgacattacccagccctttaatatgaattgttccatgaagctggttgagttttg |
6734984 |
T |
|
| Q |
391 |
ccaaatctttgagatcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagctttcccatat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||| |||||||||||||||| |
|
|
| T |
6734985 |
ccaaatctttgagatcagattcattatgggcttccacaataaaatatgataggctttgaagattgtttagctttcccatat |
6735065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 9 - 467
Target Start/End: Original strand, 8453282 - 8453761
Alignment:
| Q |
9 |
tcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaac |
108 |
Q |
| |
|
|||||| | |||||||||||||| |||||||| |||| ||||| |||||||| | |||||| ||||||| |||||| | |||||||| |||| |
|
|
| T |
8453282 |
tcttcacctatgatctttattccatcacagtctgaaatagaaagcatcttgagaaaggggagtgtcccaagtggtggcaacaaagaacataatccacaaa |
8453381 |
T |
|
| Q |
109 |
cct-taaattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagt |
207 |
Q |
| |
|
|| || ||| ||||||||||||||| ||||||||| |||||||| |||||||||||| ||| |||||||||| | || ||| | ||| ||||||||| |
|
|
| T |
8453382 |
actgtagatt-aagagatactaagtttggtaaatgataaccccttatccaatttggaaagctattacctttgtattttgagatggtaagcctcttcaagt |
8453480 |
T |
|
| Q |
208 |
tgctatttggttttagagcctccaaaactaacaggttactttcagccatt------------tcttctcgtccgccattgaactcagtatgtaattcttc |
295 |
Q |
| |
|
| |||||||||| ||||||||||| ||| ||| || |||||||||||| ||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
8453481 |
ttctatttggttggagagcctccaagactgacacattgctttcagccattgactcatccatttcttctcttccgccatcaaacttcatatgtaattcttc |
8453580 |
T |
|
| Q |
296 |
ta---------tatctttcaaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagt |
386 |
Q |
| |
|
|| ||||||||||||||| || |||| ||||||| ||| || |||||||||||||||| ||||| ||||| ||||||||||||||| ||| |
|
|
| T |
8453581 |
taaatatttcgtatctttcaaatttacagtagcagaatctgcaagatcgctaacattacccaacccttcaatatcaattgctccatgaagatggtttagt |
8453680 |
T |
|
| Q |
387 |
tttgccaaatctttgagatcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagctttccc |
467 |
Q |
| |
|
|||||||| ||||| ||||||||| |||| || ||||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
8453681 |
tttgccaactctttaagatcagatacattctgctcttccacaataaaatatgacaagctttgaagattgtttagctttccc |
8453761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 318 - 471
Target Start/End: Original strand, 6946248 - 6946401
Alignment:
| Q |
318 |
gcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattat |
417 |
Q |
| |
|
||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| || || |||||||| ||||| | |
|
|
| T |
6946248 |
gcagcatctgcaggatcaatcacattacccaaccctttaatatcaattgttccatgaagatggtttagtttccccaactccttaagatcagactcattct |
6946347 |
T |
|
| Q |
418 |
gggcttccacaataaaatatgacaaggtctgaagattatttagctttcccatat |
471 |
Q |
| |
|
| |||||||||||||||| | |||| ||||||||| ||||| ||||| |||| |
|
|
| T |
6946348 |
gctcttccacaataaaataaggtaaggcctgaagattgtttagatttcctatat |
6946401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 6840177 - 6840067
Alignment:
| Q |
119 |
aagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggt |
218 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||||||||| ||||||| ||| |||||||||||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
6840177 |
aagagatactaagttggataaatgacaagcccttagccaacttggaaagctattacctttgtagtgttttatgttgagcttctccaagttgctatttggt |
6840078 |
T |
|
| Q |
219 |
tttagagcctc |
229 |
Q |
| |
|
| |||||||| |
|
|
| T |
6840077 |
tgaagagcctc |
6840067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 6946028 - 6946138
Alignment:
| Q |
119 |
aagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggt |
218 |
Q |
| |
|
||||||||||||||| | ||||||| ||| ||||||||||||||||| ||||| || ||||||| ||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
6946028 |
aagagatactaagtttgataaatgaaaaccacttagccaatttggaaagctactgccattgtagtatgtgatggtgagcttcttcaagttgctctttggt |
6946127 |
T |
|
| Q |
219 |
tttagagcctc |
229 |
Q |
| |
|
| |||||||| |
|
|
| T |
6946128 |
tgaagagcctc |
6946138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 8570227 - 8570114
Alignment:
| Q |
119 |
aagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggt |
218 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||| |||||||||||| ||||| || ||||||| ||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
8570227 |
aagagatactaagttgggtaaaagaaaacccattaaccaatttggaaagctactgccattgtagtatgtgatggtgagcctcttcaagttgctatttggt |
8570128 |
T |
|
| Q |
219 |
tttagagcctccaa |
232 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
8570127 |
tgaagagcatccaa |
8570114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 6730001 - 6729885
Alignment:
| Q |
116 |
ttcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctattt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||||| ||| || | || ||||||||| |||||| |
|
|
| T |
6730001 |
ttcaagagatactaagttgggtaaatgacaacccctcagccaatttggaaagctattacctttgtatcgtgagattgtaagtcacttcaagtttctattt |
6729902 |
T |
|
| Q |
216 |
ggttttagagcctccaa |
232 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
6729901 |
ggttgtagagcctccaa |
6729885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 6450073 - 6450008
Alignment:
| Q |
116 |
ttcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgta |
181 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
6450073 |
ttcaagagatactaagttgggtaaatgacaacccctcagccaatttggaaagctattacctttgta |
6450008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 6481258 - 6481145
Alignment:
| Q |
119 |
aagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggt |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| | || |||| ||| | ||| |||| ||| | ||||||||| |
|
|
| T |
6481258 |
aagagatactaagttgggtaaatgacaaccccttatccaatttggaaatctattacctctatattgtgagatgctaagcctctttaagcttctatttggt |
6481159 |
T |
|
| Q |
219 |
tttagagcctccaa |
232 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
6481158 |
tgaagagcctccaa |
6481145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 8470207 - 8470427
Alignment:
| Q |
9 |
tcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaac |
108 |
Q |
| |
|
|||||| |||| ||||||||||| | ||||||| | || | ||| | ||||||| | ||||| |||||||||| ||||||| | |||| | ||| | |
|
|
| T |
8470207 |
tcttcaccaattatctttattccatgacagtcacagatagcaagctccttgagacacgggagctgtccaagtggtggcaaatggagacatgatccacagc |
8470306 |
T |
|
| Q |
109 |
ccttaaattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagtt |
208 |
Q |
| |
|
|| |||| ||||||||||||||| |||||||||| |||||||| ||| |||||||| || |||||||||| |||| |||| ||| | |||||||| |
|
|
| T |
8470307 |
tctgtaatttaagagatactaagtttggtaaatgacaaccccttatccactttggaaagcttttacctttgtattgtgagatgtaaagcctattcaagtt |
8470406 |
T |
|
| Q |
209 |
gctatttggttttagagcctc |
229 |
Q |
| |
|
| ||||||||| |||||||| |
|
|
| T |
8470407 |
gttatttggttgaagagcctc |
8470427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 7586635 - 7586738
Alignment:
| Q |
126 |
actaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggttttagag |
225 |
Q |
| |
|
|||||||||||||||| || |||||| | |||||||| ||| ||| ||||||||||||||| ||| | ||| |||||||| |||||||||||| |||| |
|
|
| T |
7586635 |
actaagttgggtaaatcacaacccctcatccaatttgcaaacctattacctttgtagtgtgagatgataagcctcttcaagctgctatttggttgaagag |
7586734 |
T |
|
| Q |
226 |
cctc |
229 |
Q |
| |
|
|||| |
|
|
| T |
7586735 |
cctc |
7586738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 13271925 - 13271758
Alignment:
| Q |
16 |
caatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaacccttaaa |
115 |
Q |
| |
|
||||||||| |||||| | |||| || |||||||||| |||| ||||||||| | || ||||||| |||||| |||||| | ||||| ||| || |
|
|
| T |
13271925 |
caatgatctctattccatgacagccagaaatggaaagcttctcgagagaaggcaactgcccaagtggtggcaactgggaacagagtttacatcccaacaa |
13271826 |
T |
|
| Q |
116 |
ttcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagt |
183 |
Q |
| |
|
||||||||||||||| ||||||| |||| | ||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
13271825 |
ttcaagagatactaaattgggtagatgatgatccccaagccaatttggaaagctactacctctgtagt |
13271758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 6486270 - 6486191
Alignment:
| Q |
150 |
cttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggttttagagcctc |
229 |
Q |
| |
|
||||||||| ||||||| | | ||||||||||| || | |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6486270 |
cttagccaacttggaaaacgattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctc |
6486191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 6932336 - 6932419
Alignment:
| Q |
146 |
accccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggttttagagcctc |
229 |
Q |
| |
|
|||| |||||||| ||||||| | | ||||||||||| || | |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6932336 |
accctttagccaacttggaaaacgattacctttgtagcgtttgatgttgagcttcttcaagttgctatttgattgaagagcctc |
6932419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 6236411 - 6236549
Alignment:
| Q |
45 |
atggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaacccttaaattcaagagatactaagttgggtaaatgac |
144 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||| |||||| |||||| | ||||| ||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
6236411 |
atggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaacaatatttacatcccaacaattcaagagatactaaattgggtagatgat |
6236510 |
T |
|
| Q |
145 |
taccccttagccaatttggaaatctactacctttgtagt |
183 |
Q |
| |
|
| ||| |||||||| ||||| ||||||||| |||||| |
|
|
| T |
6236511 |
gatccccaagccaattaggaaagctactacctctgtagt |
6236549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 471
Target Start/End: Complemental strand, 6480994 - 6480885
Alignment:
| Q |
362 |
aattgttccatgaagatggttgagttttgccaaatctttgagatcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagc |
461 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||| ||||||||||||||| |||| | ||||||||| |||||| | || || |||||| | |||||| |
|
|
| T |
6480994 |
aatttttccatgaagatggtttagtttttccaactctttgagatcagatccatttttctcttccacaacaaaataaggcagtgtttgaagactgtttagc |
6480895 |
T |
|
| Q |
462 |
tttcccatat |
471 |
Q |
| |
|
||||| |||| |
|
|
| T |
6480894 |
tttcctatat |
6480885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 6140943 - 6141159
Alignment:
| Q |
16 |
caatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaacccttaaa |
115 |
Q |
| |
|
||||||||| |||||| | |||| | |||||||||| |||||||||||||||| || ||||||| |||||| |||||| |||| ||| || |
|
|
| T |
6140943 |
caatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaacagtgtgtacatcccaacaa |
6141042 |
T |
|
| Q |
116 |
ttcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctattt |
215 |
Q |
| |
|
||||||||||||||| ||||||| |||| | ||| |||||||| ||||| ||||||||| |||||| | ||| ||||| || | | ||| |||||| |
|
|
| T |
6141043 |
ttcaagagatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattt |
6141142 |
T |
|
| Q |
216 |
ggttttagagcctccaa |
232 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
6141143 |
ggttgaagagcctccaa |
6141159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 382
Target Start/End: Original strand, 8588694 - 8588778
Alignment:
| Q |
298 |
tatctttcaaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggtt |
382 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||| | ||||||||||| ||||| ||||||||| | |||||||||||||| |
|
|
| T |
8588694 |
tatctttcaaattggctgtcacagcatctgcaggatcaattacattacccaaaccttttatatgaattttcccatgaagatggtt |
8588778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 6257859 - 6258026
Alignment:
| Q |
16 |
caatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaacccttaaa |
115 |
Q |
| |
|
|||||||||||||||| | |||| | |||||||||| |||||||||||||||| | ||||||| |||||| |||||| ||||| ||| || |
|
|
| T |
6257859 |
caatgatctttattccatgacagcctgaaatggaaagcttcttgagagaagggaacttcccaagtggtggcaactgggaacaatgtttacatcccactaa |
6257958 |
T |
|
| Q |
116 |
ttcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagt |
183 |
Q |
| |
|
||||||||||||||| || |||| || | | ||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
6257959 |
ttcaagagatactaaatttggtagattaagatccccaagccaatttggaaagctactacctctgtagt |
6258026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 6167646 - 6167715
Alignment:
| Q |
114 |
aattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagt |
183 |
Q |
| |
|
||||||||||||||||| ||||||| |||| | ||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
6167646 |
aattcaagagatactaaattgggtagatgatgatccccaagccaatttggaaagctactacctctgtagt |
6167715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 6898843 - 6898912
Alignment:
| Q |
114 |
aattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagt |
183 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | ||| |||||||||||||||||||| ||| |||||| |
|
|
| T |
6898843 |
aattctagagatactaaattgggtaaatgatgaaccccaagccaatttggaaatctactgcctctgtagt |
6898912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 6723451 - 6723323
Alignment:
| Q |
16 |
caatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaacccttaaa |
115 |
Q |
| |
|
||||| ||| |||||| |||||| | |||||||||| |||| |||| | |||| || ||||||| ||| || |||||| || ||||| ||| || |
|
|
| T |
6723451 |
caatggtctctattccatcacagcctgaaatggaaagcttctcgagaaaggggaactgcccaagtggtggtaactgggaacagaatttacatcccaacaa |
6723352 |
T |
|
| Q |
116 |
ttcaagagatactaagttgggtaaatgac |
144 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
6723351 |
ttcaagagatactaaattgggtaaatgac |
6723323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 8890 - 8406
Alignment:
| Q |
1 |
ccataaaat-cttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacata |
99 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8890 |
ccataaaattcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgctggcaaacaggaacata |
8791 |
T |
|
| Q |
100 |
acttacaacccttaaattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagctt |
199 |
Q |
| |
|
|| ||||||||| | || ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
8790 |
acccacaacccttcagttgaagagatactaagttcggtaaatgactaccccttagccaatttggaaagctactacctttgtagcatgtgatgttgagctt |
8691 |
T |
|
| Q |
200 |
cttcaagttgctatttggttttagagcctccaaaactaacaggttactttcagccatttcttctcgtccgccattgaactcagtatgtaattcttcta-- |
297 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||| | |||||| |||||||||||| ||||||||||||||| | || |||||||||| |
|
|
| T |
8690 |
cttcaagttgctatttggttgtaaagcctccaagactaacacacttctttcatccatttcttctcttccgccattgaactccatttgaaattcttctaaa |
8591 |
T |
|
| Q |
298 |
-------tatctttcaaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttg |
390 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590 |
tacttcttatctttcaaatttgatgtggcagcatctgcaggatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttg |
8491 |
T |
|
| Q |
391 |
ccaaatctttgagatcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagctttcccatattctt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8490 |
ccaaatctttgagatcagattcattatgggcttccacaataaaatatgacatggtctgaagattatttagctttcccatattctt |
8406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 298 - 481
Target Start/End: Complemental strand, 2623847 - 2623665
Alignment:
| Q |
298 |
tatctttcaaatttaatgtggcagcatctgcagtatcactgacattacccaaccctttaatatgaattgttccatgaagatggttgagttttgccaaatc |
397 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| ||| ||||||||| |||| |||| |||||||||||||||||||| |||||| |||||||||| || |
|
|
| T |
2623847 |
tatctttcaaatttactgtagcagcatctgcaagatcgctgacattatccaagccttcaatatgaattgttccatgaa-atggttttgttttgccaactc |
2623749 |
T |
|
| Q |
398 |
tttgagatcagattcattatgggcttccacaataaaatatgacaaggtctgaagattatttagctttcccatattcttcgacat |
481 |
Q |
| |
|
||| ||||||||| ||||||| ||||| ||||||||||| ||| | | |||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
2623748 |
tttaagatcagatccattatgctcttccccaataaaatataacatgctttgaagattgtttagctttcccatatgctttgacat |
2623665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 820 - 1043
Alignment:
| Q |
9 |
tcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaac |
108 |
Q |
| |
|
|||||| |||||||||||||||| ||||| | |||| ||||| |||||||||||||| || || ||||||| ||| ||| ||||||||| ||| | |
|
|
| T |
820 |
tcttcaccaatgatctttattccatcacaatatgaaatagaaagattcttgagagaaggaagctgcccaagtggtggaaaatgggaacataatccacagc |
919 |
T |
|
| Q |
109 |
ccttaaattcaagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagtt |
208 |
Q |
| |
|
| || |||||||||||||||||||||||||| ||| ||| |||||||||||| | || || |||||| | ||| ||||| |||||||||| |
|
|
| T |
920 |
ttaacagttgaagagatactaagttgggtaaatgacaacctgttatccaatttggaaagttgctgccattgtagccttcaatagtgagcctcttcaagtt |
1019 |
T |
|
| Q |
209 |
gctatttggttttagagcctccaa |
232 |
Q |
| |
|
| ||||||||| ||||| ||||| |
|
|
| T |
1020 |
gttatttggttgaagagcatccaa |
1043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 6574598 - 6574499
Alignment:
| Q |
119 |
aagagatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagtgtgtaatgttgagcttcttcaagttgctatttggt |
218 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||||||||||||| || || || ||||||| | | ||| ||||| ||| | ||||||||||||| |
|
|
| T |
6574598 |
aagagatactaagttaggtaaatgagaacaccttagccaatttggaaagctgctgccattgtagtatttgatggtgagcctctgtaggttgctatttggt |
6574499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 35141634 - 35141574
Alignment:
| Q |
123 |
gatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagt |
183 |
Q |
| |
|
|||||||| |||||||||||| | ||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
35141634 |
gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagt |
35141574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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