View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21040_low_6 (Length: 481)

Name: NF21040_low_6
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21040_low_6
NF21040_low_6
[»] chr2 (4 HSPs)
chr2 (111-436)||(38696472-38696797)
chr2 (7-118)||(38698848-38698959)
chr2 (435-467)||(38696376-38696408)
chr2 (358-436)||(38908129-38908207)
[»] chr8 (1 HSPs)
chr8 (356-436)||(10124297-10124377)
[»] chr3 (5 HSPs)
chr3 (358-437)||(22350423-22350502)
chr3 (358-437)||(47327735-47327814)
chr3 (358-428)||(55167416-55167486)
chr3 (372-412)||(11821778-11821818)
chr3 (376-437)||(43073823-43073884)
[»] chr1 (2 HSPs)
chr1 (358-428)||(38548142-38548212)
chr1 (361-437)||(4863409-4863485)
[»] chr5 (3 HSPs)
chr5 (367-436)||(2291586-2291655)
chr5 (361-431)||(19110019-19110089)
chr5 (362-437)||(10430400-10430475)
[»] chr6 (2 HSPs)
chr6 (358-428)||(33113312-33113382)
chr6 (356-413)||(10357520-10357577)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 111 - 436
Target Start/End: Complemental strand, 38696797 - 38696472
Alignment:
Q  111 ctgctacatgaccacattatttgacttcaaccggccctgtcgtggtcacatgattttcacatttcagataagcacatttaccatcacttcagtgcaatac 210  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38696797 ctgctacatgaccacattatttgacttcaactggccctgtcgtggtcacatgattttcacatttcagataagcacatttaccatcacttcagtgcaatac 38696698  T
Q  211 tttcatatgttggaacagaaaaacataactgtacaaatagtatgacatcctgcaccgtttatattggactaaatcacaataattgaagatcataacacca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38696697 tttcatatgttggaacagaaaaacataactgtacaaatagtatgacatcctgcaccgtttatattggactaaatcacaataattgaagatcataacacca 38696598  T
Q  311 caacataaaaaactgccccttatattgttcattatatggtcaaacagatccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38696597 caacataaaaaactgccccttatattgttcattatatggtcaaacagatccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaa 38696498  T
Q  411 agcgaggaatgattgtatttttaatg 436  Q
    ||||||||||||||||||||||||||    
T  38696497 agcgaggaatgattgtatttttaatg 38696472  T

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Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 38698959 - 38698848
Alignment:
Q  7 agagaccatatattaaaatctgtgtaggattgaaatgagcagagtccaaacacgtatgcaatataactcatcaaatgaacagaccagccatgaaaaatac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38698959 agagaccatatattaaaatctgtgtaggattgaaatgagcagagtccaaacacgtatgcaatataactcatcaaatgaacagaccagccatgaaaaatac 38698860  T
Q  107 acttctgctaca 118  Q
    ||||||||||||    
T  38698859 acttctgctaca 38698848  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 467
Target Start/End: Complemental strand, 38696408 - 38696376
Alignment:
Q  435 tggggaggtttaaggtcccagcttgtttgtttt 467  Q
    |||||||||||||||||||||||||||||||||    
T  38696408 tggggaggtttaaggtcccagcttgtttgtttt 38696376  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 436
Target Start/End: Original strand, 38908129 - 38908207
Alignment:
Q  358 atccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtatttttaatg 436  Q
    |||||||| || |||||||||||| ||||||| || || ||||  || ||||||||| ||||||| || ||||||||||    
T  38908129 atccggaaggggttgagaatgattaggcaagcagcgatttgggtgatttggaaagcgcggaatgagtgcatttttaatg 38908207  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 356 - 436
Target Start/End: Original strand, 10124297 - 10124377
Alignment:
Q  356 agatccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtatttttaatg 436  Q
    |||| ||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||||| ||||    
T  10124297 agattcggaagggcttgagaatgatttggcaagcggttatttgggctatgtggaaagcgaggaacgattgtattttcaatg 10124377  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 437
Target Start/End: Original strand, 22350423 - 22350502
Alignment:
Q  358 atccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtatttttaatgg 437  Q
    |||||||| || |||||||||||||||||||||||||| |||  ||| || |||||  ||||||||||||||||||||||    
T  22350423 atccggaaggggttgagaatgatttggcaagcggcaatttggagtatttgaaaagctcggaatgattgtatttttaatgg 22350502  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Original strand, 47327735 - 47327814
Alignment:
Q  358 atccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtatttttaatgg 437  Q
    |||||||| || |||||||||||||||||||||||||| |||  ||| ||||||||    ||||||||||||||||||||    
T  47327735 atccggaaggggttgagaatgatttggcaagcggcaatttggagtatttggaaagctcaaaatgattgtatttttaatgg 47327814  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 55167486 - 55167416
Alignment:
Q  358 atccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtat 428  Q
    ||||| ||||| ||||| ||||||||||||||||| || |||| ||||||||||||| ||||  |||||||    
T  55167486 atccgaaaaggtttgaggatgatttggcaagcggcgatttgggttatgtggaaagcgcggaacaattgtat 55167416  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 11821778 - 11821818
Alignment:
Q  372 gagaatgatttggcaagcggcaatatgggctatgtggaaag 412  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  11821778 gagaatgatttggcaagcggcaatttgggttatgtggaaag 11821818  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 437
Target Start/End: Complemental strand, 43073884 - 43073823
Alignment:
Q  376 atgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtatttttaatgg 437  Q
    |||||||||||||||||||| ||| | || ||||||||  ||||||||||| | ||||||||    
T  43073884 atgatttggcaagcggcaatttggtcaatttggaaagctcggaatgattgtgtatttaatgg 43073823  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 38548142 - 38548212
Alignment:
Q  358 atccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtat 428  Q
    ||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| ||||  |||||||    
T  38548142 atccggaaaggtttgaggatgatttggcaagcggcaatttgggttatgtggaaagcgcggaacaattgtat 38548212  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 4863485 - 4863409
Alignment:
Q  361 cggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtatttttaatgg 437  Q
    ||||| || ||||||||||||||||||||||| || ||||  ||||||| ||  |||||||||||||||||||||||    
T  4863485 cggaaggggttgagaatgatttggcaagcggcgatttgggtgatgtggagagtcaggaatgattgtatttttaatgg 4863409  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 436
Target Start/End: Original strand, 2291586 - 2291655
Alignment:
Q  367 ggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtatttttaatg 436  Q
    |||||||||||||| ||||||||||  || |||||| |||||| ||||||||||||||||||||| ||||    
T  2291586 ggcttgagaatgatctggcaagcggttatttgggctttgtggagagcgaggaatgattgtattttcaatg 2291655  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 431
Target Start/End: Complemental strand, 19110089 - 19110019
Alignment:
Q  361 cggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtatttt 431  Q
    |||||||| | |||||||||||||||||||||||| |||| |||||||||||| || || ||| |||||||    
T  19110089 cggaaaggttggagaatgatttggcaagcggcaatttgggttatgtggaaagctagaaacgatcgtatttt 19110019  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 10430400 - 10430475
Alignment:
Q  362 ggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtatttttaatgg 437  Q
    ||||||| ||| | |||||||||||||||||||| ||| | || ||||||||  ||||||||||| |||| |||||    
T  10430400 ggaaaggtttgcgtatgatttggcaagcggcaatttggtcaatttggaaagcttggaatgattgtgttttcaatgg 10430475  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 33113382 - 33113312
Alignment:
Q  358 atccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagcgaggaatgattgtat 428  Q
    ||||||||||| ||||| ||||||||||||||||| || |||| ||||||||||||| ||||  |||||||    
T  33113382 atccggaaaggtttgaggatgatttggcaagcggcgatttgggttatgtggaaagcgcggaacaattgtat 33113312  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 10357577 - 10357520
Alignment:
Q  356 agatccggaaaggcttgagaatgatttggcaagcggcaatatgggctatgtggaaagc 413  Q
    |||| |||||||| | |||| |||||||||||||||| ||||||| ||||||||||||    
T  10357577 agattcggaaagggtggagattgatttggcaagcggctatatgggttatgtggaaagc 10357520  T

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