View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21040_low_7 (Length: 451)

Name: NF21040_low_7
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21040_low_7
NF21040_low_7
[»] chr3 (6 HSPs)
chr3 (1-310)||(33990716-33991025)
chr3 (373-431)||(33991088-33991146)
chr3 (26-56)||(1116401-1116431)
chr3 (22-59)||(4216083-4216120)
chr3 (4-57)||(35335587-35335640)
chr3 (26-62)||(2452426-2452462)
[»] chr5 (3 HSPs)
chr5 (238-306)||(18855231-18855299)
chr5 (24-60)||(6760514-6760550)
chr5 (396-431)||(18854971-18855006)
[»] chr4 (3 HSPs)
chr4 (238-308)||(42868453-42868523)
chr4 (1-42)||(7367536-7367577)
chr4 (5-53)||(43843634-43843682)
[»] chr1 (2 HSPs)
chr1 (1-60)||(3523374-3523433)
chr1 (11-53)||(52156777-52156819)
[»] chr7 (1 HSPs)
chr7 (22-60)||(438696-438734)
[»] chr6 (4 HSPs)
chr6 (25-58)||(4323114-4323147)
chr6 (15-52)||(32926315-32926352)
chr6 (24-60)||(29236264-29236300)
chr6 (23-59)||(32921007-32921043)
[»] chr2 (1 HSPs)
chr2 (26-62)||(15804118-15804154)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 33990716 - 33991025
Alignment:
Q  1 cacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaaaccattggtcagtgtcatacaccagaatccagatatgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33990716 cacgacactaacacatagacgccaataataatttgagaaaattgaagtgcttaaatgtaaaccatgggtcagtgtcatacaccagaatccagatatgttc 33990815  T
Q  101 agtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatataaagacgttgaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33990816 agtgttatctgataattgagttttaagtttaatgtctctaacagtgaagttttattgaaatgcagttataaaagctgtgctatataaagacgtagaaatt 33990915  T
Q  201 tctgagaccaagaaggttgctggactaaaaggtaaactgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctga 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990916 tctgagaccaagaaggttgctggactaaaaggtaaattgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctga 33991015  T
Q  301 ggtatataaa 310  Q
    ||||||||||    
T  33991016 ggtatataaa 33991025  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 33991088 - 33991146
Alignment:
Q  373 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgctt 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991088 acaatatttgatgtttatttatatttcagagagaactatggctgtgatgttgtttgctt 33991146  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 1116401 - 1116431
Alignment:
Q  26 taataatttgagaaaattgaagtgattaaat 56  Q
    |||||||||||||||||||||||||||||||    
T  1116401 taataatttgagaaaattgaagtgattaaat 1116431  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 4216120 - 4216083
Alignment:
Q  22 ccaataataatttgagaaaattgaagtgattaaatgta 59  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  4216120 ccaataataattaaagaaaattgaagtgattaaatgta 4216083  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 35335587 - 35335640
Alignment:
Q  4 gacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatg 57  Q
    |||||| |||||||||| | | |||||||||||||||||  |||||||||||||    
T  35335587 gacactgacacatagacactagtaataatttgagaaaatgaaagtgattaaatg 35335640  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 2452426 - 2452462
Alignment:
Q  26 taataatttgagaaaattgaagtgattaaatgtaaac 62  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  2452426 taataatttcagaaaattgaagtgattcaatgtaaac 2452462  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 18855299 - 18855231
Alignment:
Q  238 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtata 306  Q
    |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||| |||||||||||||    
T  18855299 tgaataaggttgtattggcttacagcggtggcttagacacatcggtcattgtcccatggctgaggtata 18855231  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 6760550 - 6760514
Alignment:
Q  24 aataataatttgagaaaattgaagtgattaaatgtaa 60  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6760550 aataataatttgagaaaatttaagtgattaaatgtaa 6760514  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 431
Target Start/End: Complemental strand, 18855006 - 18854971
Alignment:
Q  396 tttcagagagaactatggctgtgatgttgtttgctt 431  Q
    |||||||||||| |||||||||||||||||||||||    
T  18855006 tttcagagagaattatggctgtgatgttgtttgctt 18854971  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 42868523 - 42868453
Alignment:
Q  238 tgaataaggttgttctggcttatagtggtggcttagacacatcggttgttgtcccctggctgaggtatata 308  Q
    ||||||||||||| || ||||| |||||||||||||||||||| ||  ||||||| ||| |||||||||||    
T  42868523 tgaataaggttgtacttgcttacagtggtggcttagacacatcagtcattgtcccatggttgaggtatata 42868453  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7367536 - 7367577
Alignment:
Q  1 cacgacactaacacatagacgccaataataatttgagaaaat 42  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  7367536 cacgacactaacacatagacaccaataataatttgagaaaat 7367577  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 43843682 - 43843634
Alignment:
Q  5 acactaacacatagacgccaataataatttgagaaaattgaagtgatta 53  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  43843682 acactaacacgtagacaccaataataatttgagaaaataaaagtgatta 43843634  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3523374 - 3523433
Alignment:
Q  1 cacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 60  Q
    ||||||||| |||| ||||| || |||||||||||| ||||| ||||||||| |||||||    
T  3523374 cacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 52156819 - 52156777
Alignment:
Q  11 acacatagacgccaataataatttgagaaaattgaagtgatta 53  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  52156819 acacatagacgctaataataacttgagaaaatggaagtgatta 52156777  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 438734 - 438696
Alignment:
Q  22 ccaataataatttgagaaaattgaagtgattaaatgtaa 60  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  438734 ccaataataatttaagaaaattgaagtaattaaatgtaa 438696  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 4323114 - 4323147
Alignment:
Q  25 ataataatttgagaaaattgaagtgattaaatgt 58  Q
    |||| |||||||||||||||||||||||||||||    
T  4323114 ataacaatttgagaaaattgaagtgattaaatgt 4323147  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 32926352 - 32926315
Alignment:
Q  15 atagacgccaataataatttgagaaaattgaagtgatt 52  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  32926352 atagacaccaataataatttaagaaaattgaagtgatt 32926315  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 29236264 - 29236300
Alignment:
Q  24 aataataatttgagaaaattgaagtgattaaatgtaa 60  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  29236264 aataataatttgagaaaatagaagtgattgaatgtaa 29236300  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 32921043 - 32921007
Alignment:
Q  23 caataataatttgagaaaattgaagtgattaaatgta 59  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  32921043 caataataatttaagaaaattgaagtgatttaatgta 32921007  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 15804154 - 15804118
Alignment:
Q  26 taataatttgagaaaattgaagtgattaaatgtaaac 62  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  15804154 taataatttgagaaaatggaagtgattgaatgtaaac 15804118  T

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