View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21040_low_9 (Length: 398)
Name: NF21040_low_9
Description: NF21040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21040_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 44798442 - 44798792
Alignment:
| Q |
1 |
cgagcacgaaaactcaatagacgaagacgaaatctgctgactatttccgaggcggt---aagatcagcagaag------acgaagacgaaggatgatgtt |
91 |
Q |
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| T |
44798442 |
cgagcacgaagactcaatagacgaagacgaaatctgctgactatttccaagggggtggtaggagcagcagaagacgaagacgaagacgaaggatgatgtt |
44798541 |
T |
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| Q |
92 |
ccattttttgaagtaagtctgagagtttgtttaattccatttccatgatttctcaaaatccctaagccccaattcaaaaaggttacaaaccctaagcccc |
191 |
Q |
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| T |
44798542 |
ccattttttgaagtaagtctgagagtttgttcaattccatttccatgatttctcaaaatccctaagccccaattcaaaaaggttacaaaccctaagcccc |
44798641 |
T |
|
| Q |
192 |
aattcacagaacaagcaagaaaattattatgaatggaaaacgagtgaatgaaaataaatacatttggtgaagaaagaacgcgggagcgatcaactcttaa |
291 |
Q |
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| T |
44798642 |
aattcacagaacaagcaagaaaattattatgaatggaaaacgagtgaatgaaaataaatacctttggtgaagaaagaacgcgggagctatcaactcttaa |
44798741 |
T |
|
| Q |
292 |
aacgcgatgagcgagtaactgaaaaacctaatgatgatgagtgtatatatat |
343 |
Q |
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| T |
44798742 |
aacgcgatgagcgagtaactg-aaaacctaatgatgatgagtgtatatatat |
44798792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 39839964 - 39839831
Alignment:
| Q |
1 |
cgagcacgaaaactcaatagacgaagacgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgttccatttttt |
100 |
Q |
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| T |
39839964 |
cgagcacgaagactcaatagacgaagacgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcatttttt |
39839865 |
T |
|
| Q |
101 |
gaagtaagtctgagagtttgtttaattccatttc |
134 |
Q |
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| T |
39839864 |
gaagtgcgtctgagagtttgttcaattccatttc |
39839831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 39844855 - 39844740
Alignment:
| Q |
17 |
atagacgaagacgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagag |
116 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| | | ||| | |
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| T |
39844855 |
atagacgaagacggtatctgctgactatttccgagtcggtaagatcagcaaaagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgaggg |
39844756 |
T |
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| Q |
117 |
tttgtttaattccatt |
132 |
Q |
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| T |
39844755 |
tttgttcaattccatt |
39844740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 35161667 - 35161539
Alignment:
| Q |
1 |
cgagcacgaaaactcaatagacgaagacgaaatctgctgactatttccga---ggcggtaagatcagca------------gaagacgaagacgaaggat |
85 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||| || |||| || ||||| ||||||||||||||||||| |
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| T |
35161667 |
cgagcacgaagactcaatacacgaagacgaaatctgctgactatttccgagggggtggtaggagcagcagaagacgaagacgaagacgaagacgaaggat |
35161568 |
T |
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| Q |
86 |
gatgttccattttttgaagtaagtctgag |
114 |
Q |
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| T |
35161567 |
gatgttccattttttgaagtaagtctgag |
35161539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 35161536 - 35161475
Alignment:
| Q |
194 |
ttcacagaacaagcaagaaaattattat---gaatggaaaacgagtgaatgaaaataaatac |
252 |
Q |
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||||||||||| |||||||||||||||| |||||||||| |||| |||||||||||||| |
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| T |
35161536 |
ttcacagaacaggcaagaaaattattattatgaatggaaaaacagtgtatgaaaataaatac |
35161475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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