View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21041_high_1 (Length: 590)
Name: NF21041_high_1
Description: NF21041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21041_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Original strand, 2245317 - 2245878
Alignment:
| Q |
19 |
gttaaatccaaaactatctaaattggccacaataatactcatcacagctctgattgctacactttgttttttagtataccttttaatgccatacacaaca |
118 |
Q |
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| T |
2245317 |
gttaaatccaaaactatctaaattggccacaataatactcatcacagctctgattgctacactttgttttttagtataccttttaatgccatacacaaca |
2245416 |
T |
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| Q |
119 |
ggttgattgtgatagagataatgaaaagatttttaattcacagacgtatacgtatttctgctattttgaattctttttactggaacttacacatcttgta |
218 |
Q |
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| T |
2245417 |
ggttgattgtgatagagataatgaaaagatttttaattcacagacgtatacgtatttctgctattttgaattctttttactggaacttacacatcttgta |
2245516 |
T |
|
| Q |
219 |
gtttgcagcttaacataagtgtttatgaataagctatatctttaaaccaaaatatataaaatctaaccatttttgtgcaagctacaatctgtgtttacaa |
318 |
Q |
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| T |
2245517 |
gtttgcagcttaacataagtgtttatgaataagctatatctttaaaccaaaatatataaaatctaaccatttttgtgcaagctacaatctgtgtttacaa |
2245616 |
T |
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| Q |
319 |
tcatggattgttaatgaaataagcggtaaaaagcctataatatgtcataacctgttttaaaaaattcttttaaatataatcacaattgtaaaacaagtag |
418 |
Q |
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| T |
2245617 |
tcatggattgttaatgaaataagcggtaaaaagcctataatatgtcataacctgttttaaaaaattcttttaaatataatcacaattgtaaaacaagtag |
2245716 |
T |
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| Q |
419 |
ataatttcaaacaagacaatctcggtagcnnnnnnnnnnnnnnnnnngacaatctaaatagatcatgttagtgtgttttgtctgaaacaagtgttattta |
518 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245717 |
ataatttcaaacaagacaatctcggtagcaaaaaaaaaaaaaaaaaagacaatctaaatagatcatgttagtgtgttttgtctgaaacaagtgttattta |
2245816 |
T |
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| Q |
519 |
aaaatgtctaaatttcctttcttcaaaacaaaattatctaaatttccttaacaactcctatg |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245817 |
aaaatgtctaaatttcctttcttcaaaacaaaattatctaaatttccttaacaactcctatg |
2245878 |
T |
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