View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21041_high_3 (Length: 401)
Name: NF21041_high_3
Description: NF21041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21041_high_3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 21 - 401
Target Start/End: Complemental strand, 41483352 - 41482972
Alignment:
| Q |
21 |
atcacgatgtgccatccacccaaagagtctatctccccgctcctgctcccgtaaagccaagtaatccctcttaccacagtgctctgcttgaaagctcctc |
120 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41483352 |
atcacgacgtgccatccacccaaagagtctatctccccgctcctgctcccgtaaagccaagtaatccctcttaccacagtgctctgcttgaaagctcctc |
41483253 |
T |
|
| Q |
121 |
tctaacttcatagcattgtggaaaccatcccactctcttccaaattgaacaactgcaaaggctgtttgtcctctaaagttccacagggcagtaactttca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41483252 |
tctaacttcatagcattgtggaaaccatcccactctcttccaaattgaacaactgcaaaggctgtttgtcctctaaagttccacagggcagtaactttca |
41483153 |
T |
|
| Q |
221 |
atgggtgaaagccgttcatgatcagctcatccttaattattttatgattcttcccaacatactttccgctttttgggtcaatatgagtaacaatattttt |
320 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41483152 |
atgggtgaaagccgttcatgatcagctcttccttaatttttttatgattcttcccaacatactttccgctttttgggtcaatatgagtaacaatattttt |
41483053 |
T |
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| Q |
321 |
caaaatcaccatccatggccaaacaaacaactcatcatcctcaacattcacatatcccaaatgaccctcagcatcattcat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41483052 |
caaaatcaccatccatggccaaacaaacaactcatcatcctcaacattcacattacccaaatgaccctcagcatcattcat |
41482972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 359
Target Start/End: Complemental strand, 40750550 - 40750220
Alignment:
| Q |
29 |
gtgccatccacccaaagagtctatctccccgctcctgctcccgtaaagccaagtaatccctcttaccacagtgctctgcttgaaagctcctctctaactt |
128 |
Q |
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|||||||||| ||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||| |||||| | |
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| T |
40750550 |
gtgccatccagccaaatagtctatctcctcgctcctgctcccataaacccaagtaatccctcttaccacagtgctctgcttgaaatcccctttctaacat |
40750451 |
T |
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| Q |
129 |
catagcattgtggaaaccatcccactctcttccaaattgaacaactgcaaaggctgtttgtcctctaaagttccacagggcagtaactttcaatgggtga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| | ||||||| | ||||||||||||| || ||| |
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| T |
40750450 |
catagcattgtggaaaccatcccactctcttccaaattcaacaattgcaaagggtgtttgtccttgatggttccacggcgcagtaactttcatcggatga |
40750351 |
T |
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| Q |
229 |
aagccgttcatgatcagctcatccttaattattttatgattcttcccaacatactttccgctttttgggtcaatatgagtaacaatatttttcaaaatca |
328 |
Q |
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|| || |||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||| || || ||||||||||||||||||||| | |
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| T |
40750350 |
aaccctttcatgatcagctcctccttaatttgtttatgattcttcccataatactttctgctttttgggttaaaatcagtaacaatatttttcaaaatga |
40750251 |
T |
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| Q |
329 |
ccatccatggccaaacaaacaactcatcatc |
359 |
Q |
| |
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||||||||||||| ||||||||||||||||| |
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| T |
40750250 |
ccatccatggccatacaaacaactcatcatc |
40750220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 29 - 359
Target Start/End: Complemental strand, 41476290 - 41475960
Alignment:
| Q |
29 |
gtgccatccacccaaagagtctatctccccgctcctgctcccgtaaagccaagtaatccctcttaccacagtgctctgcttgaaagctcctctctaactt |
128 |
Q |
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|||||||||| ||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
41476290 |
gtgccatccagccaaatagtctatctccaagctcctgcttccgtaaacccaagtaatccctcttaccacagtgttctgcctgaaagctcctctctaactt |
41476191 |
T |
|
| Q |
129 |
catagcattgtggaaaccatcccactctcttccaaattgaacaactgcaaaggctgtttgtcctctaaagttccacagggcagtaactttcaatgggtga |
228 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||| ||||||||| ||||||||| | | || ||| |
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| T |
41476190 |
catagcattgtggaaaccatcccactcttttccaaattcaacaattgcaaagggtgtttgtcctctagggttccacagcgcagtaactctgatcggctga |
41476091 |
T |
|
| Q |
229 |
aagccgttcatgatcagctcatccttaattattttatgattcttcccaacatactttccgctttttgggtcaatatgagtaacaatatttttcaaaatca |
328 |
Q |
| |
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|| || |||||||||||||| ||||||||| | |||||||||||||||| ||||||||| ||||| ||||||| || ||||||| | || ||| || | |
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| T |
41476090 |
aaccctttcatgatcagctcctccttaattttcttatgattcttcccaatatactttccacttttcgggtcaaaattagtaacattgttagccaatatga |
41475991 |
T |
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| Q |
329 |
ccatccatggccaaacaaacaactcatcatc |
359 |
Q |
| |
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||||||||||||| ||||||||||||||||| |
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| T |
41475990 |
ccatccatggccagacaaacaactcatcatc |
41475960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 369
Target Start/End: Original strand, 16409460 - 16409805
Alignment:
| Q |
24 |
acgatgtgccatccacccaaagagtctatctccccgctcctgctcccgtaaagccaagtaatccctcttaccacagtgctctgcttgaaagctcctctct |
123 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16409460 |
acgacgtgccatccacccaaagagtctatctccccgctcctgctctcgtaaagccaagtaatccctcttaccacagtgctctgcttgaaagctcctttct |
16409559 |
T |
|
| Q |
124 |
aacttcatagcattgtggaaaccatcccactctcttccaaattgaacaactgcaaaggctgtttgtcctctaaagttccacagggcagtaactttcaatg |
223 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||| ||| ||||||||| ||||||||||||| | |
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| T |
16409560 |
aacttcatagcattgtggaaaccatcccactgtcttccaaactcaacaactgcaaagggtgtttgtcctttaacgttccacagtgcagtaactttcatcg |
16409659 |
T |
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| Q |
224 |
ggtgaaagccgttcatgatcagctcatccttaattattttatgattcttcccaacatactttccgctttttgggtcaatatgagtaacaatatttttcaa |
323 |
Q |
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| ||||| || |||||||||||||| || | |||| | |||| ||||||||||||||||||||| ||||| ||||||| || ||||| | | || ||| |
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| T |
16409660 |
gctgaaaccctttcatgatcagctcctcttcaattttcttattattcttcccaacatactttccacttttcgggtcaaaattagtaatattgttggccaa |
16409759 |
T |
|
| Q |
324 |
aatcaccatccatggccaaacaaacaactcatcatcctcaacattc |
369 |
Q |
| |
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|| |||||||||||||| ||||||||||||| ||| |||||||| |
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| T |
16409760 |
tatgaccatccatggccagacaaacaactcattatcagcaacattc |
16409805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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