View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21041_high_4 (Length: 378)
Name: NF21041_high_4
Description: NF21041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21041_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 33998569 - 33998924
Alignment:
| Q |
9 |
gaagaaaataaatgaggaatttacaaatctggataaagaggtaaactgtttggaaagtgaaaaaa-tagtatcgtgaaaacaagagagaaatcactaata |
107 |
Q |
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| T |
33998569 |
gaagaaaataaatgaggaatttacaaatctggataaagaggtaaacagtttggaaagtgaaaaaaatagtatcgtgaaaacaagagagaaatcactaata |
33998668 |
T |
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| Q |
108 |
attttcactcacttgttgtaacagtttctcccttatttccgc--gacttattattttttggcatgtctcttttcttttatatcttgttcaacatttgata |
205 |
Q |
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| T |
33998669 |
attttcactcacttgttctaacagtttctcccttatttccgcaagacttattattttttggcatgtctcttttcttttatatcttgttcaacatttgatg |
33998768 |
T |
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| Q |
206 |
gtctatccaaggtgagacttataatttacaacacttcaacaatgttttgtttggttcaaaggtttctatacttacttgcacactgtattgattgcattat |
305 |
Q |
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| T |
33998769 |
gtctatccaaggtgggacttataatttacaacacttcaacaatgttttgtttggttcaaaggtttctatacttacttgcacactgtattgattgcattat |
33998868 |
T |
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| Q |
306 |
tgcatttcaacctagtgagtggctggtctgcaagaggattttacctcctaaattag |
361 |
Q |
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| T |
33998869 |
tgcatttcaacctagggagtggctggtctgcaagaggattttacctcctaaattag |
33998924 |
T |
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