View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21041_high_5 (Length: 300)
Name: NF21041_high_5
Description: NF21041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21041_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 19270299 - 19270583
Alignment:
| Q |
6 |
taaagacacgtccttttctatgttggtgagaaaatcgactttgannnnnnnaatcgacattaatagacgattttggtcatctttgagatctgacgcaaac |
105 |
Q |
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| T |
19270299 |
taaagacacgtctttttctatgtcggtgagaaaatcaactttgacttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaac |
19270398 |
T |
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| Q |
106 |
aattttttacccataatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggccaaggtgatgacaaatttt |
205 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
19270399 |
aattttttacccatgatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaaatttt |
19270498 |
T |
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| Q |
206 |
ccttatcttgnnnnnnnggtttcatcttcttcgtgctctttggtttcactcttctttctgcgtaagacatgcttcgaccttcatc |
290 |
Q |
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| T |
19270499 |
ccttatcttgtttttttggtttcatcttcttcgtgctctttggtttcactcttctttctgcgtgagacatgcttctaccttcatc |
19270583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 1587497 - 1587223
Alignment:
| Q |
16 |
tccttttctatgttggtgagaaaatcgactttgannnnnnnaatcgacattaatagacgattttggtcatctttgagatctgacgcaaacaattttttac |
115 |
Q |
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| T |
1587497 |
tccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttac |
1587398 |
T |
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| Q |
116 |
ccataatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggccaaggtgatgacaaattttccttatcttg |
215 |
Q |
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| T |
1587397 |
acatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatg |
1587298 |
T |
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| Q |
216 |
nnnnnnnggtttcatcttcttcgtgctctttggtttcactcttctttctgcgtaagacatgcttcgaccttcatc |
290 |
Q |
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| T |
1587297 |
tttttttggtttgatcttcttcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc |
1587223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 1590726 - 1591000
Alignment:
| Q |
16 |
tccttttctatgttggtgagaaaatcgactttgannnnnnnaatcgacattaatagacgattttggtcatctttgagatctgacgcaaacaattttttac |
115 |
Q |
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||||||||||||| |||||||||||||||||||| || || |||||| ||||||||||||||||| ||||||| |||||| |||||||||||| |
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| T |
1590726 |
tccttttctatgtcggtgagaaaatcgactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttac |
1590825 |
T |
|
| Q |
116 |
ccataatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggccaaggtgatgacaaattttccttatcttg |
215 |
Q |
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| T |
1590826 |
acatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatg |
1590925 |
T |
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| Q |
216 |
nnnnnnnggtttcatcttcttcgtgctctttggtttcactcttctttctgcgtaagacatgcttcgaccttcatc |
290 |
Q |
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| T |
1590926 |
tttttttggtttgatcttcttcgtggtctttggtttaacacttctttccgcataaaacatgctgctaccttcatc |
1591000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 262
Target Start/End: Complemental strand, 1580924 - 1580751
Alignment:
| Q |
89 |
tgagatctgacgcaaacaattttttacccataatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggcca |
188 |
Q |
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|||||||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||| |
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| T |
1580924 |
tgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcgg |
1580825 |
T |
|
| Q |
189 |
aggtgatgacaaattttccttatcttgnnnnnnnggtttcatcttcttcgtgctctttggtttcactcttcttt |
262 |
Q |
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| T |
1580824 |
aggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttt |
1580751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 262
Target Start/End: Original strand, 1603891 - 1604064
Alignment:
| Q |
89 |
tgagatctgacgcaaacaattttttacccataatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggcca |
188 |
Q |
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|||||||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||| |
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| T |
1603891 |
tgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcgg |
1603990 |
T |
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| Q |
189 |
aggtgatgacaaattttccttatcttgnnnnnnnggtttcatcttcttcgtgctctttggtttcactcttcttt |
262 |
Q |
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| T |
1603991 |
aggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttt |
1604064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 39616026 - 39616178
Alignment:
| Q |
63 |
cattaatagacgattttggtcatctttgagatctgacgcaaacaattttttacccataatatatttgatatcagtgccattcaactctttgatcttgttc |
162 |
Q |
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|||||| |||||| ||||| | || | || |||||||||||||||||| || ||| |||||| |||||||||||||||||||||| |||||||||||| |
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| T |
39616026 |
cattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaactccttgatcttgttc |
39616125 |
T |
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| Q |
163 |
tctatgtgaataggcaatattggccaaggtgatgacaaattttccttatcttg |
215 |
Q |
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| | | |||||| ||||||||| |||| | | |||||||| ||||||||| |
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| T |
39616126 |
ttgacattaataggtaatattggcggaggtaaagccaaatttttcttatcttg |
39616178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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