View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21041_high_8 (Length: 258)
Name: NF21041_high_8
Description: NF21041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21041_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 39809399 - 39809154
Alignment:
| Q |
1 |
tggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacg |
100 |
Q |
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| T |
39809399 |
tggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacg |
39809300 |
T |
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| Q |
101 |
ttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttgga |
200 |
Q |
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| T |
39809299 |
ttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttgga |
39809200 |
T |
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| Q |
201 |
ttgaaatgatcaccactttctctcgctgcagccgccaccctttgct |
246 |
Q |
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| T |
39809199 |
ttgaaatgatcaccactttctctcgctgcagccgccaccctttgct |
39809154 |
T |
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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 15794985 - 15794812
Alignment:
| Q |
35 |
aaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagc |
134 |
Q |
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| T |
15794985 |
aacctgcttcttctttcgtgcaagatgccaaatacgccaacacatgttctccaaccttgaacttctttcccttgtgttgcgtgttgcaaccaccttaacc |
15794886 |
T |
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| Q |
135 |
catgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatg |
208 |
Q |
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|| || |||| | |||||| ||||||||| ||| || ||||| ||||| |||||||||||||||||||| |
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| T |
15794885 |
caagtgcgatataaatcagattcatcaacacttgccacaacctcttccacaaaatactttgttggattgaaatg |
15794812 |
T |
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