View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21041_low_2 (Length: 541)
Name: NF21041_low_2
Description: NF21041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21041_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 24200645 - 24200343
Alignment:
| Q |
1 |
gtaataccggaatgactagcttcgaaacataatagaactagaatgtatcattggcataaggcaaacaagataatta----ttaatgcaaag-ccttgact |
95 |
Q |
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| T |
24200645 |
gtaataccggagtgactagcttcgaaacataataggactagaatgtatcattggcataaggcaaacaagataattaattattaatgcaaagtccttgact |
24200546 |
T |
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| Q |
96 |
ctaaatatgcaaaattcataatcatcaaacaaagaatatagcataatctcaatgatttagctttatttgattgtttcaaatcatgaagggcattagttta |
195 |
Q |
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| T |
24200545 |
ctaaatatgcaaaattcataatcatcaaacaaagaatatagcataatcttaatgatttagctttatttgattgtttcaaatcatgaagggcattagttta |
24200446 |
T |
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| Q |
196 |
agattttcttgtcattggttgcaagaaatggaccaagaccattagtgagagctgatgatgagatcaacgaagatttcagaagactatgagcctgcagttc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24200445 |
agattttcttgtcattggttgcaagaaatggaccaagaccattagtgagagctgatgatgagatcaacgaagctttcagaagactatgagcctgcagttc |
24200346 |
T |
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| Q |
296 |
cac |
298 |
Q |
| |
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||| |
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| T |
24200345 |
cac |
24200343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 321 - 522
Target Start/End: Complemental strand, 24200319 - 24200118
Alignment:
| Q |
321 |
catgaacttgtcaatacaaaatattttgcgttgtcaattatcacaatcattcatacatgtgattttataaatagtttatgaccaaagtcccaagagtttt |
420 |
Q |
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| T |
24200319 |
catgaacttgtcaatacaaaatattttgcgttgtcaattatcacaatcattcatacatgtgattttataaatagtttatgaccaaagtcccaagagtttt |
24200220 |
T |
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| Q |
421 |
tatgattgacaataaaaaattacttatattgaaggggaatctgaactaaatcataataatgaataatctaaggagctttgtcgaaataaaagaaattaaa |
520 |
Q |
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| T |
24200219 |
tatgattgacaataaaaaattacttatattgaaggggaatctgaactaaatcataataatgaataatctaaggagctttgtcgaaataaaagaaattaaa |
24200120 |
T |
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| Q |
521 |
tc |
522 |
Q |
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|| |
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| T |
24200119 |
tc |
24200118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 24192527 - 24192240
Alignment:
| Q |
12 |
atgactagcttcgaaacataatagaactagaatgtatcattggcataaggcaaacaagataattattaatgcaaag-ccttgactctaaatatgcaaaat |
110 |
Q |
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|||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| | |||||||||||||| |||| || ||||||||| |||| |
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| T |
24192527 |
atgactagcttcgaaacataataggactacaatgtaagattggaggaaggcaaacaagccagttattaatgcaaagtccttaacaataaatatgcgaaat |
24192428 |
T |
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| Q |
111 |
tcataatcatcaaacaaagaatatagcataatctcaatgatttagctttatttgattgtttcaaatcatgaagggcattagtttaagattttcttgtcat |
210 |
Q |
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| T |
24192427 |
tcataatctgcaaacaaagaataaagcataatctcaatgatttagctttatttgattgtttcaaatcatgaagtgcactagtttaacattttcttgtcat |
24192328 |
T |
|
| Q |
211 |
tggttgcaagaaatggaccaagaccattagtgagagctgatgatgagatcaacgaagatttcagaagactatgagcctgcagttccac |
298 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |
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| T |
24192327 |
tggttgaaagaaatggaccaagaccattagttagagctgatgatgagatcaaagaagctttaagaagactatgagcctgcagttccac |
24192240 |
T |
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