View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21041_low_7 (Length: 269)

Name: NF21041_low_7
Description: NF21041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21041_low_7
NF21041_low_7
[»] chr3 (26 HSPs)
chr3 (25-160)||(19268730-19268864)
chr3 (221-269)||(19270025-19270073)
chr3 (25-64)||(29677679-29677718)
chr3 (1-39)||(20086269-20086307)
chr3 (1-38)||(1448940-1448977)
chr3 (25-62)||(20914047-20914084)
chr3 (25-62)||(20922165-20922202)
chr3 (25-61)||(1448995-1449031)
chr3 (25-60)||(34019333-34019368)
chr3 (25-59)||(19229253-19229287)
chr3 (1-39)||(37248104-37248142)
chr3 (1-39)||(47329130-47329168)
chr3 (1-39)||(50977759-50977797)
chr3 (1-39)||(51080891-51080929)
chr3 (1-39)||(51475221-51475259)
chr3 (1-38)||(20760279-20760316)
chr3 (25-62)||(20760363-20760400)
chr3 (1-38)||(21890066-21890103)
chr3 (1-38)||(27070695-27070732)
chr3 (1-38)||(39069623-39069660)
chr3 (3-39)||(3697012-3697048)
chr3 (1-37)||(3697294-3697330)
chr3 (25-57)||(10618387-10618419)
chr3 (25-61)||(27071031-27071067)
chr3 (3-39)||(32651059-32651095)
chr3 (1-37)||(50365095-50365131)
[»] chr5 (21 HSPs)
chr5 (85-160)||(1588162-1588237)
chr5 (213-269)||(1587712-1587768)
chr5 (1-39)||(6739910-6739948)
chr5 (1-39)||(11000683-11000721)
chr5 (1-39)||(16752011-16752049)
chr5 (25-59)||(20408347-20408381)
chr5 (1-39)||(27457152-27457190)
chr5 (1-39)||(31710430-31710468)
chr5 (1-39)||(39824704-39824742)
chr5 (1-38)||(6252120-6252157)
chr5 (1-38)||(6600344-6600381)
chr5 (1-38)||(11692355-11692392)
chr5 (1-38)||(11935593-11935630)
chr5 (25-62)||(26035267-26035304)
chr5 (1-38)||(27457373-27457410)
chr5 (25-58)||(41282545-41282578)
chr5 (25-61)||(3351904-3351940)
chr5 (1-37)||(14717502-14717538)
chr5 (1-37)||(19398150-19398186)
chr5 (25-57)||(35155068-35155100)
chr5 (25-57)||(35342383-35342415)
[»] chr7 (19 HSPs)
chr7 (85-160)||(39615081-39615153)
chr7 (25-61)||(25801468-25801504)
chr7 (25-61)||(47294554-47294590)
chr7 (1-40)||(44544303-44544342)
chr7 (3-38)||(48628672-48628707)
chr7 (1-39)||(30876154-30876192)
chr7 (25-62)||(11476457-11476494)
chr7 (1-38)||(18353040-18353077)
chr7 (1-38)||(39033928-39033965)
chr7 (25-58)||(40851128-40851161)
chr7 (1-38)||(40851179-40851216)
chr7 (1-38)||(42979546-42979583)
chr7 (1-34)||(44800618-44800651)
chr7 (1-38)||(45233666-45233703)
chr7 (1-38)||(48628953-48628990)
chr7 (1-37)||(2960793-2960829)
chr7 (25-61)||(45233721-45233757)
chr7 (24-56)||(47218963-47218995)
chr7 (25-57)||(47281029-47281061)
[»] chr2 (26 HSPs)
chr2 (1-56)||(7297172-7297227)
chr2 (1-57)||(16246130-16246186)
chr2 (1-38)||(8899829-8899866)
chr2 (1-39)||(772183-772221)
chr2 (1-39)||(19915962-19916000)
chr2 (1-39)||(27328482-27328520)
chr2 (1-39)||(27328732-27328770)
chr2 (1-39)||(37654241-37654279)
chr2 (25-58)||(771881-771914)
chr2 (1-38)||(2094366-2094403)
chr2 (1-38)||(2456158-2456195)
chr2 (1-38)||(7297440-7297477)
chr2 (25-62)||(8899884-8899921)
chr2 (25-58)||(12759655-12759688)
chr2 (1-38)||(12759706-12759743)
chr2 (1-38)||(23673081-23673118)
chr2 (25-62)||(28650327-28650364)
chr2 (1-38)||(33106925-33106962)
chr2 (1-38)||(36444184-36444221)
chr2 (1-38)||(37838445-37838482)
chr2 (1-38)||(45124015-45124052)
chr2 (1-38)||(45124267-45124304)
chr2 (25-57)||(16246485-16246517)
chr2 (1-37)||(17484758-17484794)
chr2 (25-57)||(41178311-41178343)
chr2 (25-57)||(41500408-41500440)
[»] chr4 (43 HSPs)
chr4 (3-56)||(42273649-42273702)
chr4 (1-39)||(14564691-14564729)
chr4 (1-39)||(19168770-19168808)
chr4 (1-39)||(25734431-25734469)
chr4 (1-39)||(50276343-50276381)
chr4 (1-38)||(48707689-48707726)
chr4 (1-38)||(55517141-55517178)
chr4 (25-61)||(28812189-28812225)
chr4 (1-40)||(19496353-19496392)
chr4 (25-60)||(24622991-24623026)
chr4 (25-60)||(25734515-25734550)
chr4 (25-60)||(39995069-39995104)
chr4 (8-39)||(39995122-39995153)
chr4 (25-59)||(9339418-9339452)
chr4 (25-63)||(22298330-22298368)
chr4 (1-39)||(22298666-22298704)
chr4 (1-39)||(28159908-28159946)
chr4 (1-39)||(30466958-30466996)
chr4 (19-57)||(32118901-32118939)
chr4 (1-39)||(35929935-35929973)
chr4 (1-39)||(40988777-40988815)
chr4 (1-39)||(48551954-48551992)
chr4 (1-39)||(50542309-50542347)
chr4 (1-38)||(8882221-8882258)
chr4 (1-38)||(9339334-9339371)
chr4 (25-58)||(11795058-11795091)
chr4 (1-38)||(12196374-12196411)
chr4 (25-62)||(19496438-19496475)
chr4 (1-38)||(23135214-23135251)
chr4 (1-38)||(25730388-25730425)
chr4 (1-38)||(28160161-28160198)
chr4 (25-58)||(31208564-31208597)
chr4 (1-38)||(44490106-44490143)
chr4 (1-38)||(48149395-48149432)
chr4 (1-38)||(49118507-49118544)
chr4 (10-38)||(4545202-4545230)
chr4 (25-61)||(17847416-17847452)
chr4 (1-37)||(20534313-20534349)
chr4 (25-57)||(23553267-23553299)
chr4 (25-57)||(24458537-24458569)
chr4 (25-61)||(26017265-26017301)
chr4 (1-37)||(28812244-28812280)
chr4 (25-61)||(37381659-37381695)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-39)||(252646-252684)
[»] chr8 (15 HSPs)
chr8 (1-39)||(440735-440773)
chr8 (85-160)||(8152557-8152629)
chr8 (25-61)||(9056659-9056695)
chr8 (3-39)||(21356673-21356709)
chr8 (25-60)||(22684251-22684286)
chr8 (1-39)||(1293634-1293672)
chr8 (1-39)||(23972505-23972543)
chr8 (1-39)||(24193085-24193123)
chr8 (25-59)||(36739614-36739648)
chr8 (1-38)||(37933790-37933827)
chr8 (25-57)||(3875785-3875817)
chr8 (1-37)||(8137070-8137106)
chr8 (25-61)||(8137334-8137370)
chr8 (25-57)||(35884336-35884368)
chr8 (25-61)||(37933845-37933881)
[»] chr6 (14 HSPs)
chr6 (1-39)||(3408337-3408375)
chr6 (25-61)||(2707662-2707698)
chr6 (1-39)||(12612803-12612841)
chr6 (1-38)||(2707607-2707644)
chr6 (1-38)||(6503866-6503903)
chr6 (1-38)||(8178205-8178242)
chr6 (25-58)||(8178534-8178567)
chr6 (1-38)||(17942934-17942971)
chr6 (25-58)||(17943239-17943272)
chr6 (25-58)||(30457516-30457549)
chr6 (25-57)||(9382722-9382754)
chr6 (1-37)||(26393217-26393253)
chr6 (25-61)||(30378830-30378866)
chr6 (1-37)||(31376065-31376101)
[»] chr1 (32 HSPs)
chr1 (1-39)||(19315535-19315573)
chr1 (1-39)||(33673912-33673950)
chr1 (1-38)||(12964542-12964579)
chr1 (1-38)||(43396571-43396608)
chr1 (25-60)||(24204762-24204797)
chr1 (25-60)||(41105830-41105865)
chr1 (1-39)||(21929674-21929712)
chr1 (25-59)||(22351029-22351063)
chr1 (1-39)||(33325622-33325660)
chr1 (1-39)||(33325875-33325913)
chr1 (1-39)||(36781127-36781165)
chr1 (1-39)||(40721246-40721284)
chr1 (2-39)||(6711589-6711626)
chr1 (25-62)||(18782381-18782418)
chr1 (1-38)||(25800539-25800576)
chr1 (1-38)||(25988509-25988546)
chr1 (1-38)||(26549536-26549573)
chr1 (1-38)||(43396823-43396860)
chr1 (1-38)||(45350673-45350710)
chr1 (25-62)||(48802232-48802269)
chr1 (1-38)||(50533279-50533316)
chr1 (1-38)||(50690091-50690128)
chr1 (1-37)||(5400768-5400804)
chr1 (25-57)||(7651865-7651897)
chr1 (25-57)||(18781995-18782027)
chr1 (25-57)||(19274376-19274408)
chr1 (25-61)||(19315453-19315489)
chr1 (25-57)||(21965268-21965300)
chr1 (25-61)||(26549201-26549237)
chr1 (25-61)||(37217099-37217135)
chr1 (1-37)||(40721491-40721527)
chr1 (25-61)||(52146835-52146871)
[»] scaffold0338 (1 HSPs)
scaffold0338 (25-60)||(5803-5838)
[»] scaffold0727 (1 HSPs)
scaffold0727 (25-57)||(5388-5420)
[»] scaffold0122 (1 HSPs)
scaffold0122 (1-37)||(11262-11298)
[»] scaffold0031 (1 HSPs)
scaffold0031 (25-61)||(101293-101329)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 19268730 - 19268864
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaatttgaaagcaacatactatttcagaaactggtgattttcttgcaactattttagttcttcatc 124  Q
    ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||     
T  19268730 aaaacttaaag-acctttagatgcatttgaccaaaaatttaaaagcaacatactatttcagaaactggtaattttcttgcaactattttaggtcttcata 19268828  T
Q  125 atgaaagttgacacgtttgagatgttatgcctgcat 160  Q
    ||||||||||||||||||||||||||||||||||||    
T  19268829 atgaaagttgacacgtttgagatgttatgcctgcat 19268864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 19270025 - 19270073
Alignment:
Q  221 taaatgcagaaaataataaacgcgtttataacatcacctgattattgtc 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19270025 taaatgcagaaaataataaacgcgtttataacatcacctgattattgtc 19270073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 29677679 - 29677718
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaattt 64  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  29677679 aaaacttaaaggacctttagatgcatttgaccaaaaattt 29677718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 20086307 - 20086269
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  20086307 taaaagaacttgtttgagacttttgaaacttaaaggacc 20086269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1448940 - 1448977
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  1448940 taaaaggacttgtttgagacttttaaaacttaaaggac 1448977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 20914047 - 20914084
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20914047 aaaacttaaaggacctttagatgcatttgaccaaaaat 20914084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 20922165 - 20922202
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20922165 aaaacttaaaggacctttagatgcatttgaccaaaaat 20922202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 1448995 - 1449031
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||||||||    
T  1448995 aaaacttaaaggacctttagatgcatttgaccaaaaa 1449031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 34019368 - 34019333
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaa 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  34019368 aaaacttaaaggacctttagatgtatttgaccaaaa 34019333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 19229253 - 19229287
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaa 59  Q
    ||||||||||||||||||||||| |||||||||||    
T  19229253 aaaacttaaaggacctttagatgcatttgaccaaa 19229287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37248104 - 37248142
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  37248104 taaaagtacttgtttgagacttttgaaacttaaaggacc 37248142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47329168 - 47329130
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  47329168 taaaaggacttgtttgagacttttgaaacttaaaggacc 47329130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 50977797 - 50977759
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  50977797 taaaaggacttgtttgagacttttgaaacttaaaggacc 50977759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 51080929 - 51080891
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  51080929 taaaaggacttgtttgagacttttgaaacttaaaggacc 51080891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 51475259 - 51475221
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  51475259 taaaaggacttgtttgagacttttgaaacttaaaggacc 51475221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20760279 - 20760316
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  20760279 taaaaggacttgtttgagacttttgaaacttaaaggac 20760316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 20760363 - 20760400
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  20760363 aaaacttaaaggacctttagatgcatttgacctaaaat 20760400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21890103 - 21890066
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  21890103 taaaaggacttgtttgagacttttgaaacttaaaggac 21890066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27070732 - 27070695
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  27070732 taaaaggacttgtttgagacttttgaaacttaaaggac 27070695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39069660 - 39069623
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  39069660 taaaaggacttgtttgagacttttgaaacttaaaggac 39069623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 3697048 - 3697012
Alignment:
Q  3 aaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  3697048 aaagaacttgtttgggacttttgaaacttaaaggacc 3697012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3697294 - 3697330
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| |||| |||||||||||||||||||||||||    
T  3697294 taaaaggacttatttgagacttttaaaacttaaagga 3697330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 10618419 - 10618387
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  10618419 aaaacttaaaggacctttagatgcatttgacca 10618387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 27071031 - 27071067
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    |||||||||||||||||||||||  ||||||||||||    
T  27071031 aaaacttaaaggacctttagatgtctttgaccaaaaa 27071067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 32651059 - 32651095
Alignment:
Q  3 aaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  32651059 aaaggacttgtttgagacttttgaaacttaaaggacc 32651095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50365095 - 50365131
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  50365095 taaaaggacttgtttgagacttttgaaacttaaagga 50365131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 1588237 - 1588162
Alignment:
Q  85 gaaactggtgattttcttgcaactattttagttcttcatcatgaaagttgacacgtttgagatgttatgcctgcat 160  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||| ||||| ||||||    
T  1588237 gaaactggtgattttcttgcaattatttcaggtcttcatcatgaaagttgacatgtttgagattttatgtctgcat 1588162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 1587768 - 1587712
Alignment:
Q  213 gtactagttaaatgcagaaaataataaacgcgtttataacatcacctgattattgtc 269  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  1587768 gtactagttaaatgcagaaaataataaacgagtttataacatcacctggttattgtc 1587712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6739948 - 6739910
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6739948 taaaagaacttgtttgagacttttgaaacttaaaggacc 6739910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11000721 - 11000683
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  11000721 taaaaggacttgtttgagacttttgaaacttaaaggacc 11000683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16752049 - 16752011
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  16752049 taaaagaacttgtttgagacttttgaaacttaaatgacc 16752011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 20408381 - 20408347
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaa 59  Q
    ||||||||||||||||||||||| |||||||||||    
T  20408381 aaaacttaaaggacctttagatgcatttgaccaaa 20408347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27457190 - 27457152
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  27457190 taaaaggacttgtttgagacttttgaaacttaaaggacc 27457152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31710430 - 31710468
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  31710430 taaaaggacttgtttgagacttttgaaacttaaaggacc 31710468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39824704 - 39824742
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  39824704 taaaagaacttgtttgagacttttgaaacttaaatgacc 39824742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6252120 - 6252157
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  6252120 taaaaggacttgtttgagacttttgaaacttaaaggac 6252157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6600344 - 6600381
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  6600344 taaaaggacttgtttgagacttttgaaacttaaaggac 6600381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11692355 - 11692392
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  11692355 taaaaggacttgtttgagacttttgaaacttaaaggac 11692392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11935593 - 11935630
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  11935593 taaaaggacttgtttgagacttttgaaacttaaaggac 11935630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 26035304 - 26035267
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  26035304 aaaacttaaaggacctttagatgcatttgacctaaaat 26035267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27457373 - 27457410
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  27457373 taaaagaacttgtttgagacttttgaaacttaacggac 27457410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 41282545 - 41282578
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaa 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  41282545 aaaacttaaaggacctttagatgcatttgaccaa 41282578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 3351940 - 3351904
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  3351940 aaaacttaaaggacctttagatgcatttgacgaaaaa 3351904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14717538 - 14717502
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  14717538 taaaaggacttgtttgagacttttgaaacttaaagga 14717502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19398186 - 19398150
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  19398186 taaaagaatttgtttgagacttttgaaacttaaagga 19398150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 35155100 - 35155068
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  35155100 aaaacttaaaggacctttagatgtatttgacca 35155068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 35342383 - 35342415
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  35342383 aaaacttaaaggacctttagatgcatttgacca 35342415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 39615081 - 39615153
Alignment:
Q  85 gaaactggtgattttcttgcaactattttagttcttcatcatgaaagttgacacgtttgagatgttatgcctgcat 160  Q
    |||||||||||||||||||||||||||| || | |   ||||||||||||||||||||||||||||||| ||||||    
T  39615081 gaaactggtgattttcttgcaactatttcaggttt---tcatgaaagttgacacgtttgagatgttatgtctgcat 39615153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 25801504 - 25801468
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||||||||    
T  25801504 aaaacttaaaggacctttagatgcatttgaccaaaaa 25801468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 47294554 - 47294590
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||||||||    
T  47294554 aaaacttaaaggacctttagatgcatttgaccaaaaa 47294590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44544342 - 44544303
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacct 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  44544342 taaaaggacttgtttgagacttttgaaacttaaaggacct 44544303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 48628707 - 48628672
Alignment:
Q  3 aaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||||||||| |||||||||||||    
T  48628707 aaagaacttgtttgagacttttgaaacttaaaggac 48628672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30876192 - 30876154
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  30876192 taaaaggacttgtttgagacttttgaaacttaaaggacc 30876154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 11476494 - 11476457
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  11476494 aaaacttaaaggacctttagatgcatttgacctaaaat 11476457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18353077 - 18353040
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  18353077 taaaagaacttgtttgggacttttgaaacttaaaggac 18353040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39033965 - 39033928
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  39033965 taaaagaacttgtttgggacttttgaaacttaaaggac 39033928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 40851161 - 40851128
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaa 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  40851161 aaaacttaaaggacctttagatgcatttgaccaa 40851128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40851216 - 40851179
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  40851216 taaaaggacttgtttgagacttttgaaacttaaaggac 40851179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42979546 - 42979583
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  42979546 taaaaggacttgtttgagacttttgaaacttaaaggac 42979583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44800618 - 44800651
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  44800618 taaaagaacttgtttgagacttttgaaacttaaa 44800651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45233666 - 45233703
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  45233666 taaaaggacttgtttgagacttttgaaacttaaaggac 45233703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48628953 - 48628990
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  48628953 taaaaggacttgtttgagacttttgaaacttaaaggac 48628990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2960793 - 2960829
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  2960793 taaaaggacttgtttgagacttttgaaacttaaagga 2960829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 45233721 - 45233757
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    |||| |||||||||||||||||| |||||||||||||    
T  45233721 aaaatttaaaggacctttagatgcatttgaccaaaaa 45233757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 47218995 - 47218963
Alignment:
Q  24 taaaacttaaaggacctttagatgaatttgacc 56  Q
    |||||||||||||||||||||||| ||||||||    
T  47218995 taaaacttaaaggacctttagatgcatttgacc 47218963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 47281061 - 47281029
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  47281061 aaaacttaaaggacctttagatgcatttgacca 47281029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7297227 - 7297172
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacctttagatgaatttgacc 56  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  7297227 taaaaggacttgtttgagacttttgaaacttaaaggacctttagatgcatttgacc 7297172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16246186 - 16246130
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacctttagatgaatttgacca 57  Q
    |||||| ||||||||| ||||||| ||||||||||||| |||||||| |||||||||    
T  16246186 taaaaggacttgtttgggacttttgaaacttaaaggacttttagatgcatttgacca 16246130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8899829 - 8899866
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  8899829 taaaagaacttgtttgagacttttgaaacttaaaggac 8899866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 772183 - 772221
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  772183 taaaaggacttgtttgagacttttgaaacttaaaggacc 772221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19916000 - 19915962
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  19916000 taaaaggacttgtttgagacttttgaaacttaaaggacc 19915962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27328520 - 27328482
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  27328520 taaaaggacttgtttgagacttttgaaacttaaaggacc 27328482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27328732 - 27328770
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  27328732 taaaaggacttgtttgagacttttgaaacttaaaggacc 27328770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37654241 - 37654279
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  37654241 taaaaggacttgtttgagacttttgaaacttaaaggacc 37654279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 771914 - 771881
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaa 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  771914 aaaacttaaaggacctttagatgcatttgaccaa 771881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2094403 - 2094366
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  2094403 taaaaggacttgtttgagacttttgaaacttaaaggac 2094366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2456158 - 2456195
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  2456158 taaaaggacttgtttgagacttttgaaacttaaaggac 2456195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7297440 - 7297477
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  7297440 taaaaggacttgtttgagacttttgaaacttaaaggac 7297477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 8899884 - 8899921
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  8899884 aaaacttaaaggacctttagatgcatttgaccataaat 8899921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 12759688 - 12759655
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaa 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  12759688 aaaacttaaaggacctttagatgcatttgaccaa 12759655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12759743 - 12759706
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  12759743 taaaaggacttgtttgagacttttgaaacttaaaggac 12759706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23673081 - 23673118
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  23673081 taaaaggacttgtttgagacttttgaaacttaaaggac 23673118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 28650364 - 28650327
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  28650364 aaaacttaaaggacctttagatgcatttgacctaaaat 28650327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33106962 - 33106925
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  33106962 taaaaggacttgtttgagacttttgaaacttaaaggac 33106925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36444221 - 36444184
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  36444221 taaaaggacttgtttgagacttttgaaacttaaaggac 36444184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37838445 - 37838482
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  37838445 taaaaggacttgtttgagacttttgaaacttaaaggac 37838482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45124052 - 45124015
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  45124052 taaaaggacttgtttgagacttttgaaacttaaaggac 45124015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45124267 - 45124304
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  45124267 taaaagaatttgtttgagacttttgaaacttaaaggac 45124304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 16246485 - 16246517
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  16246485 aaaacttaaaggacctttagatgcatttgacca 16246517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17484758 - 17484794
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  17484758 taaaaggacttgtttgagacttttgaaacttaaagga 17484794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 41178311 - 41178343
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  41178311 aaaacttaaaggacctttagatgcatttgacca 41178343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 41500440 - 41500408
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  41500440 aaaacttaaaggacctttagatgcatttgacca 41500408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 42273702 - 42273649
Alignment:
Q  3 aaagaacttgtttgagacttttaaaacttaaaggacctttagatgaatttgacc 56  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  42273702 aaaggacttgtttgggacttttaaaacttaaaggacctttagatgcatttgacc 42273649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14564729 - 14564691
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  14564729 taaaaggacttgtttgagacttttaaaacttaaaggacc 14564691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19168808 - 19168770
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  19168808 taaaaggacttgtttgagacttttaaaacttaaaggacc 19168770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25734431 - 25734469
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  25734431 taaaaggacttgtttgagacttttaaaacttaaaggacc 25734469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 50276343 - 50276381
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  50276343 taaaaggacttgtttgagacttttaaaacttaaaggacc 50276381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48707726 - 48707689
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  48707726 taaaagaacttgtttgagacttttgaaacttaaaggac 48707689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 55517178 - 55517141
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  55517178 taaaagaacttgtttgagacttttgaaacttaaaggac 55517141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 28812225 - 28812189
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28812225 aaaacttaaaggacctttagatgcatttgaccaaaaa 28812189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19496353 - 19496392
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacct 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  19496353 taaaaggacttgtttgagacttttgaaacttaaaggacct 19496392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 24623026 - 24622991
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaa 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24623026 aaaacttaaaggacctttagatgcatttgaccaaaa 24622991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 25734515 - 25734550
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaa 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  25734515 aaaacttaaaggacctttagatgcatttgaccaaaa 25734550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 39995104 - 39995069
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaa 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39995104 aaaacttaaaggacctttagatgcatttgaccaaaa 39995069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 39995153 - 39995122
Alignment:
Q  8 acttgtttgagacttttaaaacttaaaggacc 39  Q
    ||||||||||||||||||||||||||||||||    
T  39995153 acttgtttgagacttttaaaacttaaaggacc 39995122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 9339418 - 9339452
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaa 59  Q
    ||||||||||||||||||||||| |||||||||||    
T  9339418 aaaacttaaaggacctttagatgcatttgaccaaa 9339452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 22298368 - 22298330
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaatt 63  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  22298368 aaaacttaaaggacctttagatgcatttgacctaaaatt 22298330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22298666 - 22298704
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  22298666 taaaaggacttgtttgagacttttgaaacttaaaggacc 22298704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28159946 - 28159908
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  28159946 taaaagaacttgtttgagatttttgaaacttaaaggacc 28159908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30466996 - 30466958
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  30466996 taaaaggacttgtttgagacttttgaaacttaaaggacc 30466958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 32118901 - 32118939
Alignment:
Q  19 acttttaaaacttaaaggacctttagatgaatttgacca 57  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  32118901 acttataaaacttaaaggacctttagatgcatttgacca 32118939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35929973 - 35929935
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  35929973 taaaaggacttgtttgagacttttgaaacttaaaggacc 35929935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40988777 - 40988815
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  40988777 taaaaggacttgtttgagacttttgaaacttaaaggacc 40988815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48551954 - 48551992
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  48551954 taaaaggacttgtttgagacttttgaaacttaaaggacc 48551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 50542347 - 50542309
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  50542347 taaaaggacttgtttgagacttttgaaacttaaaggacc 50542309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8882221 - 8882258
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  8882221 taaaaggacttgtttgagacttttgaaacttaaaggac 8882258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9339334 - 9339371
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  9339334 taaaaggacttgtttgagacttttgaaacttaaaggac 9339371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 11795091 - 11795058
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaa 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  11795091 aaaacttaaaggacctttagatgcatttgaccaa 11795058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12196411 - 12196374
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  12196411 taaaaggacttgtttgagacttttgaaacttaaaggac 12196374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 19496438 - 19496475
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  19496438 aaaacttaaaggacctttagatgcatttgacctaaaat 19496475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23135214 - 23135251
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  23135214 taaaaggacttgtttgagactttttaaacttaaaggac 23135251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25730388 - 25730425
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  25730388 taaaaggacttgtttgagacttttgaaacttaaaggac 25730425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28160161 - 28160198
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  28160161 taaaaggacttgtttgagacttttgaaacttaaaggac 28160198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 31208597 - 31208564
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaa 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  31208597 aaaacttaaaggacctttagatgcatttgaccaa 31208564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44490143 - 44490106
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  44490143 taaaaggacttgtttgagacttttgaaacttaaaggac 44490106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48149432 - 48149395
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  48149432 taaaagaacttgtttgggacttttgaaacttaaaggac 48149395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49118544 - 49118507
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  49118544 taaaaggacttgtttgagacttttgaaacttaaaggac 49118507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 4545202 - 4545230
Alignment:
Q  10 ttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||||||||||||||||    
T  4545202 ttgtttgagacttttaaaacttaaaggac 4545230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 17847416 - 17847452
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  17847416 aaaacttaaaggacctttagatgcatttgacctaaaa 17847452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20534313 - 20534349
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  20534313 taaaaggacttgtttgagacttttgaaacttaaagga 20534349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 23553267 - 23553299
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  23553267 aaaacttaaaggacctttagatgcatttgacca 23553299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 24458569 - 24458537
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  24458569 aaaacttaaaggacctttagatgcatttgacca 24458537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 26017301 - 26017265
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  26017301 aaaacttaaaggacctttagatgcatttgacctaaaa 26017265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28812280 - 28812244
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  28812280 taaaaggacttgtttgagacttttgaaacttaaagga 28812244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 37381695 - 37381659
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  37381695 aaaacttaaaggacctttagataaatttgacctaaaa 37381659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 252646 - 252684
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  252646 taaaaggacttgtttgagacttttaaaacttaaaggacc 252684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 440773 - 440735
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  440773 taaaaggacttgtttgagacttttaaaacttaaaggacc 440735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 8152629 - 8152557
Alignment:
Q  85 gaaactggtgattttcttgcaactattttagttcttcatcatgaaagttgacacgtttgagatgttatgcctgcat 160  Q
    |||||||||||||||||| ||||||||| || |||   ||||| |||||| ||||||| |||||||||| ||||||    
T  8152629 gaaactggtgattttcttccaactatttcaggtct---tcatggaagttggcacgtttaagatgttatgtctgcat 8152557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 9056659 - 9056695
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9056659 aaaacttaaaggacctttagatgcatttgaccaaaaa 9056695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 21356673 - 21356709
Alignment:
Q  3 aaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||||||||||| ||||||||||||||    
T  21356673 aaagaacttgtttgagactttttaaacttaaaggacc 21356709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 22684251 - 22684286
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaa 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22684251 aaaacttaaaggacctttagatgcatttgaccaaaa 22684286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1293634 - 1293672
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  1293634 taaaaggacttgtttgagacttttaaaatttaaaggacc 1293672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23972505 - 23972543
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  23972505 taaaagaacttgtttgagacttttgaaacttaaatgacc 23972543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24193123 - 24193085
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  24193123 taaaaggacttgtttgagacttttaaaatttaaaggacc 24193085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 36739614 - 36739648
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaa 59  Q
    ||||||||||||||||||||||| |||||||||||    
T  36739614 aaaacttaaaggacctttagatgtatttgaccaaa 36739648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37933790 - 37933827
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  37933790 taaaaggacttgtttgagacttttgaaacttaaaggac 37933827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 3875817 - 3875785
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  3875817 aaaacttaaaggacctttagatgcatttgacca 3875785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8137106 - 8137070
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  8137106 taaaaggacttgtttgagacttttgaaacttaaagga 8137070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 8137334 - 8137370
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  8137334 aaaacttaaaggacctttagatgcatttgacctaaaa 8137370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 35884368 - 35884336
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  35884368 aaaacttaaaggacctttagatgcatttgacca 35884336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 37933845 - 37933881
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    |||||||||||||| |||||||| |||||||||||||    
T  37933845 aaaacttaaaggacttttagatgcatttgaccaaaaa 37933881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3408337 - 3408375
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  3408337 taaaagaacttgtttgagacttttgaaacttaaaggacc 3408375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 2707662 - 2707698
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2707662 aaaacttaaaggacctttagatgcatttgaccaaaaa 2707698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12612841 - 12612803
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  12612841 taaaaggacttgtttgagacttttgaaacttaaaggacc 12612803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2707607 - 2707644
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  2707607 taaaaggacttgtttgagacttttgaaacttaaaggac 2707644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6503866 - 6503903
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  6503866 taaaaggacttgtttgagacttttgaaacttaaaggac 6503903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8178242 - 8178205
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  8178242 taaaaggacttgtttgggacttttaaaacttaaaggac 8178205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 8178534 - 8178567
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaa 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  8178534 aaaacttaaaggacctttagatgcatttgaccaa 8178567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17942971 - 17942934
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  17942971 taaaaggacttgtttgagacttttgaaacttaaaggac 17942934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 17943239 - 17943272
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaa 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  17943239 aaaacttaaaggacctttagatgcatttgaccaa 17943272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 30457516 - 30457549
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaa 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  30457516 aaaacttaaaggacctttagatgcatttgaccaa 30457549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 9382722 - 9382754
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  9382722 aaaacttaaaggacctttagatgcatttgacca 9382754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26393217 - 26393253
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  26393217 taaaaggacttgtttgagacttttgaaacttaaagga 26393253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 30378866 - 30378830
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  30378866 aaaacttaaaggacctttagatgcatttgacaaaaaa 30378830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31376065 - 31376101
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  31376065 taaaaggacttgtttgagacttttgaaacttaaagga 31376101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19315573 - 19315535
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  19315573 taaaagaacttgtttgagacttttgaaacttaaaggacc 19315535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33673950 - 33673912
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  33673950 taaaagaacttgtttgggacttttaaaacttaaaggacc 33673912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12964579 - 12964542
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  12964579 taaaagaacttgtttgagacttttgaaacttaaaggac 12964542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43396608 - 43396571
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  43396608 taaaaggacttgtttgagacttttaaaacttaaaggac 43396571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 24204762 - 24204797
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaa 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24204762 aaaacttaaaggacctttagatgcatttgaccaaaa 24204797  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 41105865 - 41105830
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaa 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41105865 aaaacttaaaggacctttagatgcatttgaccaaaa 41105830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21929674 - 21929712
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  21929674 taaaaggacttgtttgagacttttgaaacttaaaggacc 21929712  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 22351063 - 22351029
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaa 59  Q
    ||||||||||||||||||||||| |||||||||||    
T  22351063 aaaacttaaaggacctttagatgcatttgaccaaa 22351029  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33325660 - 33325622
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  33325660 taaaaggacttgtttgagacttttgaaacttaaaggacc 33325622  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33325875 - 33325913
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  33325875 taaaaggacttgtttgagacttttgaaacttaaaggacc 33325913  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36781165 - 36781127
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  36781165 taaaaggacttgtttgagacttttgaaacttaaaggacc 36781127  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40721284 - 40721246
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  40721284 taaaaggacttgtttgagacttttgaaacttaaaggacc 40721246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 6711589 - 6711626
Alignment:
Q  2 aaaagaacttgtttgagacttttaaaacttaaaggacc 39  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  6711589 aaaaggacttgtttgagacttttgaaacttaaaggacc 6711626  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 18782381 - 18782418
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  18782381 aaaacttaaaggacttttagatgcatttgaccaaaaat 18782418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25800576 - 25800539
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  25800576 taaaaggacttgtttgagacttttgaaacttaaaggac 25800539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25988509 - 25988546
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  25988509 taaaaggacttgtttgagacttttgaaacttaaaggac 25988546  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26549536 - 26549573
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  26549536 taaaaggacttgtttgagacttttgaaacttaaaggac 26549573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43396823 - 43396860
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  43396823 taaaaggacttgtttgagacttttgaaacttaaaggac 43396860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45350710 - 45350673
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  45350710 taaaaggacttgtttgagacttttgaaacttaaaggac 45350673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 48802269 - 48802232
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaat 62  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  48802269 aaaacttaaaggacctttagatgcatttgacctaaaat 48802232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50533316 - 50533279
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  50533316 taaaaggacttgtttgagacttttgaaacttaaaggac 50533279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50690091 - 50690128
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaaggac 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  50690091 taaaaggacttgtttgagacttttgaaacttaaaggac 50690128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5400804 - 5400768
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  5400804 taaaaggacttgtttgagacttttgaaacttaaagga 5400768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 7651865 - 7651897
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  7651865 aaaacttaaaggacctttagatgcatttgacca 7651897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 18782027 - 18781995
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  18782027 aaaacttaaaggacctttagatgcatttgacca 18781995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 19274408 - 19274376
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  19274408 aaaacttaaaggacctttagatgcatttgacca 19274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 19315489 - 19315453
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  19315489 aaaacttaatggacctttagatgtatttgaccaaaaa 19315453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 21965268 - 21965300
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  21965268 aaaacttaaaggacctttagatgtatttgacca 21965300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 26549237 - 26549201
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  26549237 aaaacttaaaggacctttagatgcatttgacctaaaa 26549201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 37217099 - 37217135
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  37217099 aaaacttaaaggacctttagatgcatttgacctaaaa 37217135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40721491 - 40721527
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  40721491 taaaaggacttgtttgagacttttgaaacttaaagga 40721527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 52146871 - 52146835
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    |||||||||||||| |||||||| |||||||||||||    
T  52146871 aaaacttaaaggacatttagatgcatttgaccaaaaa 52146835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 5803 - 5838
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaa 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5803 aaaacttaaaggacctttagatgcatttgaccaaaa 5838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 5388 - 5420
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgacca 57  Q
    ||||||||||||||||||||||| |||||||||    
T  5388 aaaacttaaaggacctttagatgcatttgacca 5420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11298 - 11262
Alignment:
Q  1 taaaagaacttgtttgagacttttaaaacttaaagga 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  11298 taaaaggacttgtttgagacttttgaaacttaaagga 11262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 101293 - 101329
Alignment:
Q  25 aaaacttaaaggacctttagatgaatttgaccaaaaa 61  Q
    |||||||||| |||||||||||| |||||||||||||    
T  101293 aaaacttaaatgacctttagatgcatttgaccaaaaa 101329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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