View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21041_low_9 (Length: 257)
Name: NF21041_low_9
Description: NF21041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21041_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 45147920 - 45148145
Alignment:
| Q |
19 |
ggtgcagcaatggggtggacaaaccgtagaagttgacagcaatggggtggacaagccatagaagttgacgagacattgtattccgcataaagttgcacgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45147920 |
ggtgcagcaatggggtggacaaaccgtagaagttgacagcaatggggtggacaagccatagaagttgacgagacattgtattccgcataaagttgcacgt |
45148019 |
T |
|
| Q |
119 |
atctcccacttcctacctgttctcttgtaaaattagggataatggtctcaaaaatcctttctgaccattttgcattgtaatgtagtagtttgtttctttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45148020 |
atctcccacttcctacctgttctcttgtaaaattagggataatggtctcaaaaatcctttctgaccattttgcattgtaatgtagtagtttgtttctttc |
45148119 |
T |
|
| Q |
219 |
aattaggttcatgacataatctgtct |
244 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
45148120 |
aattaggttcatgacataatctgtct |
45148145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University