View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_high_1 (Length: 838)
Name: NF21042_high_1
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 795; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 20 - 826
Target Start/End: Complemental strand, 51741164 - 51740358
Alignment:
| Q |
20 |
atagcctcacgatcgtccgggcctccaaagaaaagtgttgcaacgtttttcgtactatcagatgtaatcaactgtgagaaaccagggaccttagacatcc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51741164 |
atagcctcacgatcgtccgggcctccaaagaaaagtgttgcaacgtttttcgtactatcagatgtaatcaattgtgagaaaccagggaccttagacatcc |
51741065 |
T |
|
| Q |
120 |
ctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaat |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51741064 |
ctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaat |
51740965 |
T |
|
| Q |
220 |
tcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaaagatgatactgcc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740964 |
tcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaaagatgatactgcc |
51740865 |
T |
|
| Q |
320 |
cttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatgaattattaatttcaacgacgtcattgccaccataatcatcatcgtcactaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740864 |
cttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatgaattattaatttcaacgacgtcattgccaccataatcatcatcgtcactaa |
51740765 |
T |
|
| Q |
420 |
ggtcagcattttccttttcatgaaacaataaattggatttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttttaga |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740764 |
ggtcagcattttccttttcatgaaacaataaattggatttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttttaga |
51740665 |
T |
|
| Q |
520 |
tccatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttca |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740664 |
tccatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttca |
51740565 |
T |
|
| Q |
620 |
atagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctactagca |
719 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740564 |
atagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctactagca |
51740465 |
T |
|
| Q |
720 |
caatgttgcaatcttctgcatttaaatcctgtatatacaataataaccaaattaagagttatcatttaataatacaaatgaaactgcatgaattacctac |
819 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51740464 |
caacgttgcaatcttctgcatttaaatcctgtatatacaataataaccaaattaagagtaatcatttaataatacaaatgaaactgcatgaattacctac |
51740365 |
T |
|
| Q |
820 |
ctttgct |
826 |
Q |
| |
|
||||||| |
|
|
| T |
51740364 |
ctttgct |
51740358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 119 - 719
Target Start/End: Complemental strand, 10201863 - 10201260
Alignment:
| Q |
119 |
cctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaa |
218 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| ||||| | |
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| T |
10201863 |
cctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctttcaagttttccatcga |
10201764 |
T |
|
| Q |
219 |
ttcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaaagatgatactgc |
318 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||||||||||| ||| ||||| |||| || |||||||||| ||| ||||||| || |||| |
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|
| T |
10201763 |
ttcgttgatgcttgtgaaagggaagaagaataatcgatacttgaagattttctgcttcgctgcacacttcttcatacagacttagaaaagaagaaactgt |
10201664 |
T |
|
| Q |
319 |
ccttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatgaattattaatttcaacgacgtcattgccaccataa---tcatcatcgtca |
415 |
Q |
| |
|
|||| |||| || |||||||||||||||||| ||||||| | ||||| | ||||||||| || || || ||||| |||||| | || ||||| || |
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| T |
10201663 |
ccttttttgttggaccaaaatctttgtgtcttcagtgaaggtatctagggcattattaatgtccaccacatcatttccaccaaaggcttcgtcatcatcg |
10201564 |
T |
|
| Q |
416 |
ctaaggtcagcattttccttttcatgaaacaataaattggatttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttt |
515 |
Q |
| |
|
|| | || ||||||| |||||||| | || || || || ||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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|
| T |
10201563 |
ctgatatcgccattttctttttcatggtataacaagtttgacttgattttcttcacaagctctattaagtgcattaaataagtggtggaaggtgatgttt |
10201464 |
T |
|
| Q |
516 |
tagatccatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtgg |
615 |
Q |
| |
|
|||| ||||| |||||||||||||| || ||||| | |||||||| ||||||||||| ||||||||||||||| ||| || |||||||| |||||||| |
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|
| T |
10201463 |
tagagccatgtattgctagtattgtggctagtatcgcagatacttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtgg |
10201364 |
T |
|
| Q |
616 |
ttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctact |
715 |
Q |
| |
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|||||| | ||||||||| ||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||| | |||||| | |||| |
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|
| T |
10201363 |
ttcaattgttgtatggttgtttgaaaacattttctcttccccctttgctataaacgacacaattattcctgatattattgtgtttaatactatcgatact |
10201264 |
T |
|
| Q |
716 |
agca |
719 |
Q |
| |
|
|||| |
|
|
| T |
10201263 |
agca |
10201260 |
T |
|
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