View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_high_13 (Length: 450)
Name: NF21042_high_13
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 98 - 431
Target Start/End: Complemental strand, 36655369 - 36655039
Alignment:
| Q |
98 |
tagtagataattgcagtgtctctgtgcatgcttaattctcaaagtccatagatggataaaccaccactcctcttcaacttcaaaatcatcatcttactcc |
197 |
Q |
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||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
36655369 |
tagtagataattgcaatgtatctgtgtatgcttaattctcaaagtccagagatggaaaaaccaccactactcttcaacttcaaaatcatc---ttactcc |
36655273 |
T |
|
| Q |
198 |
ttctcacccaatcactcctcaccacatcatcacactctctaaatcccaccaccgttaccttctccgtcaccgaatacggagcaatcggcgacggcatcca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36655272 |
ttctcacccaatcactcctcaccacatcatcacactctctaaaccccaccaccgtcaccttctccgtcaccgaatacggagcaatcggcgacggcatcca |
36655173 |
T |
|
| Q |
298 |
ctacgataccgtatcaatccaaaccgccatagactcctgcccttactccatcccctgccgcatcaccttcccatctcccggtaactacctaaccgcaacc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36655172 |
ctacgataccgtatcaatccaaaccgccatagactcctgcccttactctatcccctgccgcatcactttcccatctcccggtaactacctaaccgcaacc |
36655073 |
T |
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| Q |
398 |
atattccttcgatccggcgtcgtcctcaacgtcg |
431 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36655072 |
atattccttcgatccggcgtcgtcctcaacgtcg |
36655039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 12118233 - 12118202
Alignment:
| Q |
20 |
ttttttattatatttatctagtattattattt |
51 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
12118233 |
ttttttattatatttatctagtattattattt |
12118202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 27965649 - 27965692
Alignment:
| Q |
10 |
aattctataatttttt--attatatttatctagtattattattt |
51 |
Q |
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| T |
27965649 |
aattctatcatttttttaattatatttatctagtattattattt |
27965692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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