View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_high_14 (Length: 417)
Name: NF21042_high_14
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_high_14 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 5775168 - 5774752
Alignment:
| Q |
1 |
acaccaatcgtatgtcctccgacaatgtctacagagccatcgtcgtttgccagaccagccttactaaagcggcacgggacttctctgaaatcgcctccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775168 |
acaccaatcgtatgtcctccgacaatgtctacagagccatcgtcgtttgccagaccagccttactaaagcggcacgggacttctctgaaatcgcctccaa |
5775069 |
T |
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| Q |
101 |
atttcatttggaagtttttcatgtgttttcggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775068 |
atttcatttggaagtttttcatgtgttttcggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattac |
5774969 |
T |
|
| Q |
201 |
ctcgtaggagattttgaggttaacatgtcgaaagaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5774968 |
ctcgtaggagattttgaggttaacatgtcgaaagaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaa |
5774869 |
T |
|
| Q |
301 |
aggacaatccctctgaccagatttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774868 |
aggacaatccctctgaccagatttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaa |
5774769 |
T |
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| Q |
401 |
tgtctacagggccatca |
417 |
Q |
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| T |
5774768 |
tgtctacagggccatca |
5774752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 123 - 417
Target Start/End: Complemental strand, 5768766 - 5768472
Alignment:
| Q |
123 |
gtgttttcggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggtta |
222 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5768766 |
gtgttttcggaggatgaaatatctaagctgtataggatccggaagacggtgatggagatgcttagagataggaattacctcgtaggagattttgaggtta |
5768667 |
T |
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| Q |
223 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
322 |
Q |
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| T |
5768666 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
5768567 |
T |
|
| Q |
323 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatca |
417 |
Q |
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| T |
5768566 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttgcaccaaacgtatgaactccgagaatgtctacagagccatca |
5768472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 123 - 416
Target Start/End: Complemental strand, 5775421 - 5775128
Alignment:
| Q |
123 |
gtgttttcggaggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggtta |
222 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||| |||||| |
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| T |
5775421 |
gtgttttcggaggatgaaatatcaaagctgtataggatccggaagaaggtgatggagatgcttcgcgacaggaattacctcgtaggagatttcgaggttt |
5775322 |
T |
|
| Q |
223 |
acatgtcgaaagaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagat |
322 |
Q |
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||||| ||| ||||||||||||||| |||||| ||| || ||||||||||||||||||||||||| || || ||||| |||||||||||||||||||| |
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| T |
5775321 |
gtatgtcaaaacaagagttcaaggagacatatggtgagaacttgaagagagaagaccttgtcatcaagaaagccaaaaaagacaatccctctgaccagat |
5775222 |
T |
|
| Q |
323 |
ttatgtcttcttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatc |
416 |
Q |
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|||||| ||||| || ||| |||| ||||||| |||||||||||| |||||||||||||| || ||| ||| || ||||||||||| |||||| |
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| T |
5775221 |
ttatgtgttctttcctgagaatgataaggttgacgtccacaccttaaggacttacaccaatcgtatgtcctccgacaatgtctacagagccatc |
5775128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 5768512 - 5768399
Alignment:
| Q |
2 |
caccaatcgtatgtcctccgacaatgtctacagagccatcgtcgtttgccagaccagccttactaaagcggcacgggacttctctgaaatcgcctccaaa |
101 |
Q |
| |
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|||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
5768512 |
caccaaacgtatgaactccgagaatgtctacagagccatcatcgtttgccagaccagccttactaacatggcac------tctctgaaatcgactccaaa |
5768419 |
T |
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| Q |
102 |
tttcatttggaagtttttca |
121 |
Q |
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|||||||||||||||||||| |
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| T |
5768418 |
tttcatttggaagtttttca |
5768399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 5774770 - 5774670
Alignment:
| Q |
24 |
aatgtctacagagccatcgtcgtttgccagaccagccttactaaagcggcacgggac---ttctctgaaatcgcctccaaatttcatttggaagtttttc |
120 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||| |||| || || ||||| | ||| |||||||||||||||||||||||||| |
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| T |
5774770 |
aatgtctacagggccatcatcgtttgccagaccagccttactaacatggcatggaacagtatctctcagttcgactccaaatttcatttggaagtttttc |
5774671 |
T |
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| Q |
121 |
a |
121 |
Q |
| |
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| T |
5774670 |
a |
5774670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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