View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_high_16 (Length: 399)
Name: NF21042_high_16
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 10267268 - 10267453
Alignment:
| Q |
13 |
cagacatccatcttgacgaaacactgtccaagctcggccaatcatcttgatcacctaagatcaatacttacttttgacttttgtctatttgctctttcca |
112 |
Q |
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| T |
10267268 |
cagacatccatcttgacgaaacactgtccaagctcggccaatcatcttgatcacctaagatcaatacttacttttgacttttgtctatttgttctttcca |
10267367 |
T |
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| Q |
113 |
tattgttattctattattgcagaaggatacttactcataaattgtgttttcttctatacttattcagtcagattatcagagtctta |
198 |
Q |
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| T |
10267368 |
tattgttattctattattgcagaaggatacttactcataaattatgttttcttctatacttattcagtcagattatcagagtctta |
10267453 |
T |
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Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 10267594 - 10267669
Alignment:
| Q |
306 |
aacatacttttcacgaatataagcaataggagcaaggatagaaagagcaagtagatctctgtagaggcaaaaaacc |
381 |
Q |
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| T |
10267594 |
aacatacttttcacgaatataagcaataggagcaaggatagaaagagcaagtagatctctgtagaggcaaaaaacc |
10267669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 25461302 - 25461257
Alignment:
| Q |
125 |
attattgcagaaggatacttactcataaattgtgttttcttctata |
170 |
Q |
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| T |
25461302 |
attattacagaaggatacttactcataaattctgttttcttctata |
25461257 |
T |
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