View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21042_high_24 (Length: 354)
Name: NF21042_high_24
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_high_24 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 123619 - 123943
Alignment:
| Q |
13 |
gagattgatagcattggtctcatggttttcagaacagaatagcggtaaggtatcaccctttgcagccc-tgttgcacttagagcatgctttgtagtacca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
123619 |
gagattgatagcattggtctcatggttttcagaacagaatagcggtaaggtatcaccctttgcagcccctgttgcacttagtgcacgctttgtagtacca |
123718 |
T |
|
| Q |
112 |
cccattcttggatggtttgacttgattaatcttcacaacagtcacacacaaagttgtctgtgggagaaaataaaaagacacaccatgatatgtattagtt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123719 |
cccattcttggatggtttgacttgattaa-cttcacaacaatcacacacaaagttgtctgtgggagaaaataaaaagacacaccatgatatgtattagtt |
123817 |
T |
|
| Q |
212 |
aatttatagatcatattatnnnnnnnggaaaataataatgagttgagaattaggtatctaataaggaagaagatagaccacctccgtgagttgcaagatg |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123818 |
aatttatagatcatattataaaaaaaggaaaataataatgagttgagaattaggtatctaataaggaagaagatagaccacctccgtgagttgcaagatg |
123917 |
T |
|
| Q |
312 |
tcatgtagtggtagaacaacagcact |
337 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
123918 |
tcatgtagtggtagaacaacagcact |
123943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 22078422 - 22078578
Alignment:
| Q |
14 |
agattgatagcattggtctcatggttttcagaacagaatagcggtaaggtatcaccctttgcagccctgttgcacttagagcatgctttgtagtaccacc |
113 |
Q |
| |
|
|||||||||||||||||||| || |||| ||| || || ||||| ||||||||||||||| | ||||||||||| | |||||||||||||||||||| |
|
|
| T |
22078422 |
agattgatagcattggtctcgtgtttttggtcacacaacagtggtaaagtatcaccctttgcaactctgttgcacttggtgcatgctttgtagtaccacc |
22078521 |
T |
|
| Q |
114 |
cattcttggatggtttgacttgattaatcttcacaacagtcacacacaaagttgtct |
170 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
22078522 |
cattcttggatggtttcacttgattgatcttcacaacagtcacacacacagttgtct |
22078578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 23697426 - 23697582
Alignment:
| Q |
14 |
agattgatagcattggtctcatggttttcagaacagaatagcggtaaggtatcaccctttgcagccctgttgcacttagagcatgctttgtagtaccacc |
113 |
Q |
| |
|
||||| ||||||||||||||||| |||| || || || ||||| |||||||||||||||||||||||||| || | |||||||||||||||||||| |
|
|
| T |
23697426 |
agattaatagcattggtctcatgtttttggtcacgcaacagtggtaaagtatcaccctttgcagccctgttgcatttggtgcatgctttgtagtaccacc |
23697525 |
T |
|
| Q |
114 |
cattcttggatggtttgacttgattaatcttcacaacagtcacacacaaagttgtct |
170 |
Q |
| |
|
||||||||||||||||||||||||| || || | |||| ||||||||| |||||||| |
|
|
| T |
23697526 |
cattcttggatggtttgacttgattgattttaagaacaatcacacacacagttgtct |
23697582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University