View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_high_30 (Length: 314)
Name: NF21042_high_30
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_high_30 |
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| [»] scaffold1211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 26376795 - 26376522
Alignment:
| Q |
16 |
atcaattgatgatctaacaacagaaaatcaccattagcggtgaatttcatgttttccatcataacaatgaaagaccaacaataaaaatgaaacaataaat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26376795 |
atcaattgatgatctaacaacagaaaatcaccattagcggtgaatttcatgttttccatcataacaatgaaagaccagcaataaaaatgaaacaataaat |
26376696 |
T |
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| Q |
116 |
agtttgctgttaataaaagtgaatctgtaagtaccatagtatgtattggacgtcgggctcaattctatcattcttgcctcaaccttttctttgagtgcat |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26376695 |
agtttgctgttaataaaaatgaatctgtaagtaccatagtatgtattggacgtcgggctcaattctatcattcttgcctcaaccttttctttgagtgcat |
26376596 |
T |
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| Q |
216 |
gccaaacaaggtcctcaacaagtgaagaaaagtaaatatgaaacaagacaattagacatggagacaacattaaa |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
26376595 |
gccaaacaaggtcctcaacaagtgaagaaaagtaaataagaaacaaaacaattagacatggagacaacattaaa |
26376522 |
T |
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Back To:
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Target: scaffold1211 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 762 - 505
Alignment:
| Q |
16 |
atcaattgatgatctaacaacagaaaatcaccattagcggtgaatttcatgttttccatcataacaatgaaagaccaacaataaaaatgaaacaataaat |
115 |
Q |
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|||| ||||||||||||||||||||||| | |||||| ||||||| |||||||||||| | |||| |||||| ||||||||||||||||||| | || |
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| T |
762 |
atcagttgatgatctaacaacagaaaattatcattagttttgaatttgatgttttccatcgttacaaagaaagatcaacaataaaaatgaaacatgatat |
663 |
T |
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| Q |
116 |
agtttgctgttaataaaagtgaatctgtaagtaccatagtatgtattggacgtcgggctcaattctatcattcttgcctcaaccttttctttgagtgcat |
215 |
Q |
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| ||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
662 |
aatttgctgttcatgaaaataaatctgtaagtaccatagtatgtattggacgtcgggctcaattctatcatccttgcctcaaccttttctttgagcgcat |
563 |
T |
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| Q |
216 |
gccaaacaaggtcctcaacaagtgaagaaaagtaaatatgaaacaagacaattagaca |
273 |
Q |
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|||||||||| ||||||||||||| | |||| |||||| |||| ||||||||||||| |
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| T |
562 |
gccaaacaagatcctcaacaagtggaaaaaaataaataagaaatgagacaattagaca |
505 |
T |
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