View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_high_31 (Length: 295)
Name: NF21042_high_31
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_high_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 41102147 - 41102422
Alignment:
| Q |
20 |
ctaagccggttgaccactaaggttatctccggtccagaacttgtgagctacataatccttccaatgagtcttccgataaagagatggctccaaaagttct |
119 |
Q |
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| T |
41102147 |
ctaagccggttgaccacgaaggttatattcggtcaagaaattgtgagatacataagccttccaatgagtcttccgataaagagatggctccaaaagttct |
41102246 |
T |
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| Q |
120 |
tcgccatatgtatcattaagccaagtctgatgatcaataacaagtttaggtttggctgcaaggaataatgtgtgagttaacaatttcatagtatatttgt |
219 |
Q |
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| T |
41102247 |
tcaccatatgtatcattaagccaagtctgatgatcaataacaagtttaggtttggctgcaaggaataatgtgtgagttaacaatttcatagtatatttgt |
41102346 |
T |
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| Q |
220 |
gttggcataagtgaaaaccttgctttgacttagctatctgtaggccaaggaaatatttgagatcaccaattacttt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41102347 |
gttggcataagtgaaaaccttgctttgacttagctatctgtaggccaaggaaatatttgagatcaccaagtacttt |
41102422 |
T |
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