View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21042_high_38 (Length: 276)

Name: NF21042_high_38
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21042_high_38
NF21042_high_38
[»] scaffold0248 (1 HSPs)
scaffold0248 (16-270)||(12495-12748)
[»] chr2 (6 HSPs)
chr2 (178-270)||(32798210-32798302)
chr2 (178-270)||(32803863-32803955)
chr2 (178-270)||(32307609-32307701)
chr2 (33-97)||(32307720-32307784)
chr2 (33-97)||(32798127-32798191)
chr2 (33-97)||(32803780-32803844)
[»] chr8 (2 HSPs)
chr8 (16-111)||(7436812-7436907)
chr8 (180-238)||(7436998-7437056)


Alignment Details
Target: scaffold0248 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 12495 - 12748
Alignment:
Q  16 caattcctactatcaatcaccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcaccactccaaatcgaaaggt 115  Q
    |||||||||| ||||||||||||||||||| ||| ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12495 caattcctacaatcaatcaccttctcaatctttccaatttatgcagagaattcataaaacgcttcaacaatctcagcatcaccactccaaatcgaa-ggt 12593  T
Q  116 tgttgcctttaggattctaggcaacaactgccatatattttgtagcttgcaataatctagaattctaggcaatgcattgagaaaattattttgtggatta 215  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  12594 tgttgcctctaggattctaggcaacaacagccatatattttgtagcttgcaataatctaggattctaggcaatgcattaagaaaattcttttgtggatta 12693  T
Q  216 gatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatca 270  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  12694 gatataaaacttgcatattcaggatcgctttattctggtattaatcttctcatca 12748  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 32798210 - 32798302
Alignment:
Q  178 ttctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatca 270  Q
    ||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| ||||||||||| || ||||||||||||||| ||||    
T  32798210 ttctaggcaatgcattgagaaaactcttttgtggatcatatataaaacttgcatatttaggatcgctttcttctggtattaatcttctcatca 32798302  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 32803863 - 32803955
Alignment:
Q  178 ttctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatca 270  Q
    ||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| ||||||||||| || ||||||||||||||| ||||    
T  32803863 ttctaggcaatgcattgagaaaactcttttgtggatcatatataaaacttgcatatttaggatcgctttcttctggtattaatcttctcatca 32803955  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 32307701 - 32307609
Alignment:
Q  178 ttctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatca 270  Q
    ||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| |||||| |||| || ||||||| ||||||| ||||    
T  32307701 ttctaggcaatgcattgagaaaactcttttgtggatcatatataaaacttgcatatttaggatcactttcttctggtatttatcttctcatca 32307609  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 32307784 - 32307720
Alignment:
Q  33 caccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcac 97  Q
    |||| |||||||| ||| |||||| |  |||||||||||||||||||||||||||||||||||||    
T  32307784 caccatctcaatctttccaatttcagcagagaattcataaaacgcttcaacaatctcagcatcac 32307720  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 32798127 - 32798191
Alignment:
Q  33 caccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcac 97  Q
    |||| |||||||| ||| |||||| |  |||||||||||||||||||||||||||||||||||||    
T  32798127 caccatctcaatctttccaatttcagcagagaattcataaaacgcttcaacaatctcagcatcac 32798191  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 32803780 - 32803844
Alignment:
Q  33 caccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcac 97  Q
    |||| |||||||| ||| |||||| |  |||||||||||||||||||||||||||||||||||||    
T  32803780 caccatctcaatctttccaatttcagcagagaattcataaaacgcttcaacaatctcagcatcac 32803844  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 7436812 - 7436907
Alignment:
Q  16 caattcctactatcaatcaccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcaccactccaaatcgaa 111  Q
    |||||||||||||||||||||||||||||| ||| |||||| |  ||||||| |||||| ||||| |||||||||||||||||  |||||||||||    
T  7436812 caattcctactatcaatcaccttctcaatctttccaatttcagcagagaattgataaaatgcttcgacaatctcagcatcacccgtccaaatcgaa 7436907  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 7436998 - 7437056
Alignment:
Q  180 ctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcagg 238  Q
    ||||||||||||||||||||||  |||||||||| |||||| ||||||| |||||||||    
T  7436998 ctaggcaatgcattgagaaaatacttttgtggatcagatatgaaacttgtatattcagg 7437056  T

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