View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21042_high_4 (Length: 577)
Name: NF21042_high_4
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 552
Target Start/End: Complemental strand, 11897617 - 11897093
Alignment:
| Q |
13 |
cagaggaaggggtaatcccaccaactggttggggaaatgatgaaaattaaaatgtccgagcctagtgcttgggctaagattacgacctatgtggccgaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11897617 |
cagaggaaggggtaatcccaccaactggttagggaaatgatgaaaattaaaatgtctgagcctagtgcttgggctaagattacggcctatgtggccgaaa |
11897518 |
T |
|
| Q |
113 |
aaagtggaaagcagctttagaggctgaaatgcaacnnnnnnntggttgtcgaaaccaataacattgagcctagtgaaaatttggcagaagaccagaggct |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
11897517 |
aaagtggaaagcagctttagaggttgaaatgcaacaaaaaaatggttgtcgaaatcaataa------------------tttggcagaagaccagaggct |
11897436 |
T |
|
| Q |
213 |
ccactgcgtctacgatgatgagccttagggatttgagaaagatccattgaatttaacnnnnnnnnn-ttcaggcacaagatcctttataggaaattgatc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
11897435 |
ccactgcgtctacgatgatgagccttagggatttaagaaagatccattgaatttaacaaaaaaaatattcaggcacaagatcctttagaggaaattgatc |
11897336 |
T |
|
| Q |
312 |
tgggagatggatcag---tgaagaggccaacatatataagcttcataattgattcaaatttaaagggacaaacaattgaacttttaaaagagttcaaaaa |
408 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
11897335 |
tgagagatggatcagcagtgaagaggccaacatatataagttccataattgattcaaatttaaaggtacaaacaattgaacttttaaaagagttcaaaga |
11897236 |
T |
|
| Q |
409 |
ttgcttttgtttgggattacaatgagatgccatgatcgaatagagaaatgatggaatggaagttgccaattcgactagacaaaaatccagtgaagcagtt |
508 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11897235 |
ttgcttt-gtttgggattacaatgagatgccatgattgaatagagaaatggtggaatggaagttgccaattcgaccagacaaaaatccagtgaagcagtt |
11897137 |
T |
|
| Q |
509 |
accaagaaggtttgcaccagaaataatgtcaaaactcaaagaag |
552 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11897136 |
atcaagaaagtttgcaccagaaataatgtcaaaaatcaaagaag |
11897093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University