View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21042_high_49 (Length: 235)
Name: NF21042_high_49
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_high_49 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 12300031 - 12300250
Alignment:
| Q |
1 |
atcctacaggttcaaacaccaaagttttacaaatatgtcactttgatccaagatatcaaatattttattcattgagattgacatgtttgcattgttcaca |
100 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
12300031 |
atcctgcatgttcaaacaccaaagttttacaaatatgtcactttgatccaagatatcaactattttattcattgagattgacatgttcgcattattcaca |
12300130 |
T |
|
| Q |
101 |
cgctgagagaagaaaatagatgtgtaaccttccttgctaagctaagagcttcttctagcattgatatcttggttcacccctcccctctagctggcatttt |
200 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12300131 |
cgctgagagaagataatagatgtctaaccttccttgctaagctaagagcttcttctagcattgatatcttggttcacccctcccctcaagctggcatttt |
12300230 |
T |
|
| Q |
201 |
acaccttctttctttctatg |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12300231 |
acaccttctttctttctatg |
12300250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 35797986 - 35798167
Alignment:
| Q |
1 |
atcctacaggttcaaacaccaaagttttacaaatatgtcactttgatccaagatatcaaatattttattcattgagattgacatgtttgcattgttcaca |
100 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||| |||| |||||||| | |||||| || | ||||| |||||| |||||||||||||||||| |
|
|
| T |
35797986 |
atcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatcaaa-atctccttcatcaagattgctatgtttgcattgttcaca |
35798084 |
T |
|
| Q |
101 |
cgctgagagaagaaaatagatgtgtaaccttccttgctaagctaagagcttcttctagcattgatatcttggttcacccctcc |
183 |
Q |
| |
|
| | || ||||||||||||||| | ||||||||||||| |||| |||||||||| | || || ||||||| ||||||||| |
|
|
| T |
35798085 |
tgtttcgataagaaaatagatgtgcacacttccttgctaagataagtgcttcttctaactttaatgtcttggtccacccctcc |
35798167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 41479601 - 41479452
Alignment:
| Q |
24 |
gttttacaaatatgtcactttgatccaagatatcaaatattttattcattgagattgacatgtttgcattgttcacacgctgagagaagaaaatagatgt |
123 |
Q |
| |
|
|||| |||||||||| ||||| || || || |||||| || |||||||| || ||| |||||| |||||| ||| || || |||||||||||||| | | |
|
|
| T |
41479601 |
gtttcacaaatatgttactttaattcacgacatcaaagatcttattcatcaaggttggcatgttcgcattgctcaaacactcagagaagaaaatagtttt |
41479502 |
T |
|
| Q |
124 |
gtaaccttccttgctaagctaagagcttcttctagcattgatatcttggt |
173 |
Q |
| |
|
| | ||| || ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
41479501 |
gcagactttctaactaagctgagagcttcttctagcattgatctcttggt |
41479452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 34117042 - 34116986
Alignment:
| Q |
131 |
tccttgctaagctaagagcttcttctagcattgatatcttggttcacccctcccctc |
187 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
34117042 |
tccttgctaagtcaagagcttcttctagcattgatatcatggttcatctctcccctc |
34116986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 34144061 - 34144006
Alignment:
| Q |
131 |
tccttgctaagctaagagcttcttctagcattgatatcttggttcacccctcccct |
186 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
34144061 |
tccttgctgagttaagagcttcttctagcattgatatcatggttcatctctcccct |
34144006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 34156677 - 34156622
Alignment:
| Q |
131 |
tccttgctaagctaagagcttcttctagcattgatatcttggttcacccctcccct |
186 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
34156677 |
tccttgctgagttaagagcttcttctagcattgatatcatggttcatctctcccct |
34156622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 4925401 - 4925314
Alignment:
| Q |
86 |
tttgcattgttcacacgctgagagaagaaaatagatgtgtaaccttccttgctaagctaagagcttcttctagcattgatatcttggt |
173 |
Q |
| |
|
||||||||| |||||| || ||||||| |||||| ||||| |||| | ||||||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
4925401 |
tttgcattgctcacactctcagagaaggaaatagttgtgttgacttcttagctaagctaggagcttattctagcattgatctcttggt |
4925314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 37304268 - 37304200
Alignment:
| Q |
116 |
atagatgtgtaaccttccttgctaagctaagagcttcttctagcattgatatcttggttcacccctccc |
184 |
Q |
| |
|
|||||||| || |||||||| |||| || || ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
37304268 |
atagatgtacaaacttccttgttaagttaggaacttcttctaacattgatatcttagttcacccctccc |
37304200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33256602 - 33256694
Alignment:
| Q |
1 |
atcctacaggttcaaacaccaaagttttacaaatatgtcactttgatccaagatatcaaatattttattcattgagattgacatgtttgcatt |
93 |
Q |
| |
|
||||| || ||||||||| || |||| |||| ||| |||||||||||||||| |||||| | || ||||| ||||||||||||| ||||| |
|
|
| T |
33256602 |
atcctccaagttcaaacatgaaggtttcacaactatttcactttgatccaagacatcaaagacattcttcatcaagattgacatgttcgcatt |
33256694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University