View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_10 (Length: 483)
Name: NF21042_low_10
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 41908258 - 41908054
Alignment:
| Q |
21 |
atcaccatgagaaagggcagagtaagtgtcctccagctggtggtgttcagtgttgtacacctcctgctccttacatttatggacctcctactaatcctta |
120 |
Q |
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| T |
41908258 |
atcaccatgagaaagggcagagtaagtgtcctcctgctggtggtgttcagtgttgtacacctcctgctccttacatctatggacctcctactaatcctta |
41908159 |
T |
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| Q |
121 |
taatacttatggaccacctagtacttatgctcctcctaatccttacacttatgtgccttatggtggaggtgaacgttcagcttatgtggttatgcaattt |
220 |
Q |
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| T |
41908158 |
tgatacttatggaccacctagtacttatgctcctcctaatccttacacttatgtgccttatggtggaggtgaacgttcagcttatgtggttatgcaattt |
41908059 |
T |
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| Q |
221 |
ctagt |
225 |
Q |
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||||| |
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| T |
41908058 |
ctagt |
41908054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 290 - 467
Target Start/End: Complemental strand, 41907989 - 41907814
Alignment:
| Q |
290 |
gtgattatcgtatgtactagtaaatcaggttgtcaatactaaaatgttgttgtaggatatagatatttcatatttagatagtttgttgctccatgttgta |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41907989 |
gtgattatcgtatgtactagtaaatcaggttgtcaatactaaaatgttgttgtagtatatagatatttcatatttagatagtttgttgctccatgttgta |
41907890 |
T |
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| Q |
390 |
tataatatatggtaaaatcatctaccgagtccaattttactatgtttgctttctaatatgcactcttcaacgtgtaag |
467 |
Q |
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| T |
41907889 |
tat--tatatggtaaaatcatctaccgagtccaattttactatgtttgctttctaatatgcactcttcaacgtgtaag |
41907814 |
T |
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