View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_11 (Length: 478)
Name: NF21042_low_11
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_11 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 290 - 462
Target Start/End: Original strand, 169802 - 169974
Alignment:
| Q |
290 |
tgtaattgcatatggtcaaatgcaattgagatgaattttatcatacttcgcttaagcttcatatttaaatggaacaaatgtaatatggtcgctcgtaatt |
389 |
Q |
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| T |
169802 |
tgtaattgcatatggtcaaatgcaattgagatgaattttatcatacttcgcttaagcttcatatttaaatgaaacaaatgtaatatggtcgctcgtaatt |
169901 |
T |
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| Q |
390 |
ataccattcggtttgctttagaactgatacgatagcttgcagctcgtaatatcacagacatcaactcaaatat |
462 |
Q |
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| T |
169902 |
ataccattcggtttgctttagaactgatacgatagcttgcagctcgtaatatcacagacatcaactcaaatat |
169974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 169673 - 169732
Alignment:
| Q |
112 |
tatgataagtaatagaaaacaatacaattcctttttgaacattatgagattctgacatag |
171 |
Q |
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| T |
169673 |
tatgataagtaatagaaaacaatacaattcctttttgaacattatgagattttgacatag |
169732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 277 - 462
Target Start/End: Complemental strand, 31053452 - 31053275
Alignment:
| Q |
277 |
catatgtcatgcttgtaattgcatatggtcaaatgcaattgagatgaattttatcatacttcgcttaagcttcatatttaaatggaacaaatgtaatatg |
376 |
Q |
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| T |
31053452 |
catatgtcatgcttgtaattgcatatggtcaaatgcaattgagatgaattttatcatacttcgcttaagcttcatatttaaatggaacaaatgtaatatg |
31053353 |
T |
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| Q |
377 |
gtcgctcgtaattataccattcggtttgctttagaactgatacgatagcttgcagctcgtaatatcacagacatcaactcaaatat |
462 |
Q |
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| T |
31053352 |
gtcgctcgta--------attcggtttgctttagaactgatacgatagcttgcagctcgtaatatcacagacatcaactcaaatat |
31053275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 31053533 - 31053450
Alignment:
| Q |
16 |
atacataacaatacaatataattaagtttcttttgagtacgcatcagttggtagcacaaacatagtagaggtgcaggaagacat |
99 |
Q |
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| T |
31053533 |
atacataacaatacaatataattaagtttcttttgagtacgcatcagttggtagcacaaacatagtagaggtacaggacgacat |
31053450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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