View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_12 (Length: 454)
Name: NF21042_low_12
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 32376846 - 32376423
Alignment:
| Q |
19 |
tactttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacact |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
32376846 |
tactttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctatgaattctgttttggaaaaccatcattttctgattgcacact |
32376747 |
T |
|
| Q |
119 |
ttggttatgctgttgttggtgctctcttgctcaagaagctagaactgggaacagttatgatctcttggaagataagttatccatgaaagaaattgattcc |
218 |
Q |
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|||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32376746 |
ttggttatgctgctgttggtgctctcttgctcaagaagccaggactgggaatagttatgatatcttggaagataagttatccatgaaagaaattgattcc |
32376647 |
T |
|
| Q |
219 |
cgcgatcaatcttcggctacggaagacgtagtatcagccaaatctggctcaagttcttctcttgaaagaggtaaagatggaacaatgaatccaccaatag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32376646 |
cgcgatcaatcttcggctacggaagacgtagtatcagccaaatctggctcaagttcttctcttgaaagaggtaaagatggaacaatgaatcccccaatag |
32376547 |
T |
|
| Q |
319 |
cattagtaatacaaagagaatctctatagtctctgaaagcaaaagagggaaatgattcttcttgattgctatgtatcactacattgtttgagatgatccc |
418 |
Q |
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|||||||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
32376546 |
cattagtagtacaaagagaagctctttagtctctgaaagtaaaagagggaaatgattcttcttgattgttatgtataactacattgtttgagatgatccc |
32376447 |
T |
|
| Q |
419 |
tcaaatttctatgtaaacaatttt |
442 |
Q |
| |
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| T |
32376446 |
ttaaatttctatgtaaaccatttt |
32376423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 32365161 - 32364722
Alignment:
| Q |
19 |
tactttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365161 |
tactttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacact |
32365062 |
T |
|
| Q |
119 |
ttggttatgctgttgttggtgctctcttgctcaagaagctagaactgggaacagttatgatctcttggaagataagttatccatgaaagaaattgattcc |
218 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
32365061 |
ttggttatgctgctgttggtgctctcttgctcaagaagccaggactgggaatagttatgatatcttggaagataagttatccatgaaagaaattgatact |
32364962 |
T |
|
| Q |
219 |
cgcgatcaatcttcggctac------gg------aagacgtagtatcagccaaatctggctcaagttcttctcttgaaagaggtaaagatggaacaatga |
306 |
Q |
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|||||||||||||||| | | || |||||||||||||| |||||| | | ||||||||||||||||| || ||||||||| ||| |||| |
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| T |
32364961 |
cgcgatcaatcttcggtttcatgtttggctggacaagacgtagtatcaagcaaatccgacacaagttcttctcttgaacgacgtaaagatgaaacgatga |
32364862 |
T |
|
| Q |
307 |
atccaccaatagcattagtaatacaaagagaatct-cta---tagtctctgaaagcaaaagagggaaatgattcttcttgattgctatgtatcactacat |
402 |
Q |
| |
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||||||||||||||||| |||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32364861 |
atccaccaatagcattattaatacaaagagaagctcctaccttattctctgaaagcaaaagagggaaatgattcttcttgattgttatgtatcactacat |
32364762 |
T |
|
| Q |
403 |
tgtttgagatgatccctcaaatttctatgtaaacaatttt |
442 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
32364761 |
tgtttgagatgatccctcaaatttctatgtaaaccatttt |
32364722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 36121774 - 36121643
Alignment:
| Q |
24 |
tatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacactttggt |
123 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||| ||||||||| | ||| | |||||||| || || || | |||| ||||||| ||||||| |
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| T |
36121774 |
tatggtggtttttggaggatccaaatgagaaagaggtataatttgcctacttatgacttctgtttcggcaagcctgcggtttcggattgcatactttggc |
36121675 |
T |
|
| Q |
124 |
tatgctgttgttggtgctctcttgctcaagaa |
155 |
Q |
| |
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||| |||||||||||||||||||||||||||| |
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| T |
36121674 |
tattctgttgttggtgctctcttgctcaagaa |
36121643 |
T |
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Back To:
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