View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_17 (Length: 386)
Name: NF21042_low_17
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 31472349 - 31471981
Alignment:
| Q |
1 |
gtcgaattaatactcaaagaacagcaaatgtaccttaaatctaaaactcctctcaccaccacagaagaggggatcgtaggaattgtattcaccgcgactc |
100 |
Q |
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| T |
31472349 |
gtcgaattaatattcaaagaccagtaaaggtaccttaaatctaaaactcctctcaccaccacagaagagaggatcgtaggaattgttttcaccccgactc |
31472250 |
T |
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| Q |
101 |
ctagagtacactgtggttttaattaaagtttcaaactgtaactttagcataataacgatgaaatcaaacattaaagtatatatccataaataaaaaatag |
200 |
Q |
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| T |
31472249 |
ctagactacactgtggttttaattgaagtttcaaattgtaactttagcataataatgatgaaatcaaacattaaagtatatatctataaa-aaaaaatag |
31472151 |
T |
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| Q |
201 |
taagtgtatagaaatgggtcatatcattgaattgatgagggcaatgatctttttcattttgttttgtttatggaacccatgcgtcacattttgtcacttt |
300 |
Q |
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| T |
31472150 |
taagtgtatataaatgggtcatatcattgaattgatgagggcaatgatctttttcattttgtttt----atggaacccatgcgtcacattttgtcacttt |
31472055 |
T |
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| Q |
301 |
gagaaatgtagacgtagaaaata-----gggtctttccttttccatttttgcagcaccccttaaagcagttact |
369 |
Q |
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| T |
31472054 |
gagaaatgtagacgtagaaattaaaatggggtctttccttttccatttttgcagcaacccttaaagaagttact |
31471981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 223 - 355
Target Start/End: Complemental strand, 31459615 - 31459480
Alignment:
| Q |
223 |
atcattgaattgatgagggcaatgatctttttcattttgttttgtttatggaacccatgcgtcacattttgtcactttgagaaatgtag----acgtaga |
318 |
Q |
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| T |
31459615 |
atcattgaattgatgagagcaatgatctttttcattc-gttttgtctacgcaacccatgcgtcacattttgtcactttgagaaatgtaagtacacgtaga |
31459517 |
T |
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| Q |
319 |
aaatagggtctttccttttccatttttgcagcacccc |
355 |
Q |
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| T |
31459516 |
aaatagggtctttccttttccctttttacggcacccc |
31459480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 31459849 - 31459777
Alignment:
| Q |
32 |
accttaaatctaaaactcctctcaccaccacagaagaggggatcgtaggaattgtattcaccgcgactcctag |
104 |
Q |
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| T |
31459849 |
acctttaacctaaagcttctctcaccgccacagaagagaggaacataggtattgtattcaccccgactcctag |
31459777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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