View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_19 (Length: 376)
Name: NF21042_low_19
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 33379582 - 33379234
Alignment:
| Q |
17 |
aataatgaagttcaatcaggaaagttttaacaatttgatatattattgaaaaacctgttattaggatgcaaattaagattctctaatacaaaaatacaat |
116 |
Q |
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| T |
33379582 |
aataatgaagtccaattaggaaaattttaacaatttgatatattattgaaaaacctgttattaggatgcaaattaagattctctagtacaaaaatataat |
33379483 |
T |
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| Q |
117 |
gcactaaaagtactcaaactgttcctgtattagattcaaatttagcaggcaacaaggctatgaactagtcttttacactttaacaattttacactgtaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33379482 |
gcactaaaagtactcaaactgttcctgtattagattcaaatttagcaggcaacaaggctatgaactagtcttttacac-ttaacaattttacactgtaaa |
33379384 |
T |
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| Q |
217 |
aacaaatattacaacaacaaaacttcataactaaaatacataaacagaactaattaagaaaatgaccacttttgattcatcatgattaggccattagcac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33379383 |
gacaaatattacaacaacaaaacttcataactaaaatacataaacagaactaattaagaaaatgaccacttttgattcatcatgattaggccattagcac |
33379284 |
T |
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| Q |
317 |
ttaaccaaagaaaagggcttgtttacatgttggtggtctctgctcctcct |
366 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| || ||||| |
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| T |
33379283 |
ttaaccaatgaaaagggcttgtttacatgttggtggtctctacttctcct |
33379234 |
T |
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