View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_2 (Length: 645)
Name: NF21042_low_2
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 28 - 589
Target Start/End: Complemental strand, 39129070 - 39128505
Alignment:
| Q |
28 |
atggacatcatcaccaccaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcccgt |
127 |
Q |
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| T |
39129070 |
atggccatcatcaccaccaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgt |
39128971 |
T |
|
| Q |
128 |
gnnnnnnnnnnnnnnnncaataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacaataaacaccaagaaaatagacat |
227 |
Q |
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| T |
39128970 |
gaaaaaaaaccaaaaaacaataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacgataaacaccaagaaaatagacat |
39128871 |
T |
|
| Q |
228 |
ttaaaaatctaatcaggaaaaacaaaggttagtgaaaacagaatccaccgctctaacaacatatatacattgccaacagataaaagaaaataagaataaa |
327 |
Q |
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| T |
39128870 |
ttaaaaatctaatcaggaaaaacaaaggtaagtgaaaacagaatccaccgctctaacaacatatatacattgccaacagataaaagaaaataagaataaa |
39128771 |
T |
|
| Q |
328 |
cataaacacctagtagtaa----caatgttgataagtttatttggtggtttcaaattgaacatagttgaaacaagcaaaacccttaaaatcaatttctca |
423 |
Q |
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| T |
39128770 |
cataaacacctggtagtaagtaacaatgttgataagtttatttggtggtttcaaattgaacatagttgaaacaagcaaaacccttaaaatcaatttctca |
39128671 |
T |
|
| Q |
424 |
actatggcattcactcagaccacacaaaaatgaaaccttgttaaggaaatttcaaacaaaatgaaacataaacacagtgatactattgtgttgacacaaa |
523 |
Q |
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| T |
39128670 |
actatggcattcactcagaccacacaaaaatgaaaccttgttaaggaaatttcaaacaaaatcaaacataaacacagtgatactattgtgttgacacaaa |
39128571 |
T |
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| Q |
524 |
gcataaacacagttcaaaatgataaacaccatggaaatagacatgtagtaattacaaaacaagggt |
589 |
Q |
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| T |
39128570 |
gcataaacacagttcaaaatgataaacaccatggaaatagacatgtagtaattacaaaacaagggt |
39128505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 39496028 - 39496094
Alignment:
| Q |
40 |
accaccaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagcct |
106 |
Q |
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| T |
39496028 |
accaccaccaacaccacagaactttgacttatcagaacccttaaaagccatttttcaacggtagcct |
39496094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 39128493 - 39128444
Alignment:
| Q |
481 |
aaaatgaaacataaacacagtgatactattgtgttgacacaaagcataaa |
530 |
Q |
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| T |
39128493 |
aaaatcaaacataaacaaagtgatactattgtattgacacagagcataaa |
39128444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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