View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21042_low_21 (Length: 368)
Name: NF21042_low_21
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 43752983 - 43753313
Alignment:
| Q |
11 |
attctagtgtggagcaattcaacaacttggaatattcatattcataaggcttnnnnnnntgttatagtacatgagttccacttccacaatctacattgag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43752983 |
attctagtgtggagcaattcaacaacttggaatattcatattcataaggcttaaaaaaatgttatagtacatgagttccacttccacaatctacattgag |
43753082 |
T |
|
| Q |
111 |
ctgaatgaagggagagatcatcggacagataggaggaaagtgaatgattggaggcaggtgagattgaatatatggtcgtgtgcattccaagtatgattct |
210 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43753083 |
ctgaatgaagggagagataatcagacagataggaggaaagtgaatgattggaggcaggtgagattgaatatatggtcgtgtgcactccaagtatgattct |
43753182 |
T |
|
| Q |
211 |
acatttctaactaatgttgatgtaattnnnnnnnttctactgaaatcagggggagtctcaataataaaacaatagggcatgtgggtggggtctagatttc |
310 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43753183 |
a---ttctaactaatgttaatgtaattaaaaaaattctactgaaatcagggggagtctcaataataaaacaatagggcatgtgggtggggtctagatttc |
43753279 |
T |
|
| Q |
311 |
ggtcacgtaatatataatgatacttgattatgat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
43753280 |
ggtcacgtaatatataatgatacttgattatgat |
43753313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University