View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_26 (Length: 335)
Name: NF21042_low_26
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 36120361 - 36120671
Alignment:
| Q |
15 |
agaaaaatattggtctataatgaaccgtgattcatattagaatttacagcatatatgggcaattcatatcataatttcactatgaaatgaatagcattac |
114 |
Q |
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| T |
36120361 |
agaaaactattggtctataatgaaccgtgattgatattagaatttacagcatataaaggtaattcatatcataatttcactatgaaatgaatagcattac |
36120460 |
T |
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| Q |
115 |
cagggaaagtgcaatgcataaacttaggagggaatggcagctgtgaaacttaaaaagaagaaacatataaaatccaaagaatgggacggtgggattacga |
214 |
Q |
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| T |
36120461 |
cagggaaagtgcaatgcataaacttaggagggaatggcagctgtgaaacttaaaaagaagaaacatataaaatccaaagaa-gggacggtgggattacga |
36120559 |
T |
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| Q |
215 |
ttaagacagtgtagtacgcgcacaaaagtggaaccaaaatactaaaataaaaagagaaatgtgaatgtgcttcccataaacataaacataaacaacaatc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36120560 |
ttaagacagtgtagtacgcgcacaaaagtggaaccaaaatactaaaataaaaagagaaatgtgaatgtgcttcccataaacataaacataaacaacaatc |
36120659 |
T |
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| Q |
315 |
tgatgatgatgt |
326 |
Q |
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|||||||||||| |
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| T |
36120660 |
tgatgatgatgt |
36120671 |
T |
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