View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_27 (Length: 329)
Name: NF21042_low_27
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_27 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 16976053 - 16976362
Alignment:
| Q |
20 |
gatatatccatattaagagattgcattgtattttatactgaggaatctaattaattattgtttggtttcttaaacaaaacaaaaaggatttatagataac |
119 |
Q |
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| T |
16976053 |
gatatatccatattaagagattgcattgaattttgtactgaggaatctaattaattattgtttggtttcttaaacaaaacaaaaaggatttatagataac |
16976152 |
T |
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| Q |
120 |
actcatgtctgctacaccacgaaaccatttgtctaggttttttcatttcatttcaattttattattgttaaaagtatgccgaaaaaccacatcagaataa |
219 |
Q |
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| T |
16976153 |
actcatgtctgctacaccacgaaaccatttgtctaggttttttcatttcatttcaattttattattgttaaaagtatgccgaaaaaccacatcagaataa |
16976252 |
T |
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| Q |
220 |
tttctattattatccatacagatgctttcatatacaacatatttgagatttgaaatgattcccactccagaatcaatctcatgtgcattgtttgtttcgg |
319 |
Q |
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| T |
16976253 |
tttctattattatccatacagatgctttcatatacaacatatttgagatttgaaatgattcccactccagaatcaatctcatgtgcattgtttgtttcgg |
16976352 |
T |
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| Q |
320 |
tggctcttgc |
329 |
Q |
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| T |
16976353 |
tggctcttgc |
16976362 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 18669230 - 18669283
Alignment:
| Q |
234 |
catacagatgctttcatatacaacatatttgagatttgaaatgattcccactcca |
288 |
Q |
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| T |
18669230 |
cataaagatgctttcatatacaacatatttgagctttggaatg-ttcccactcca |
18669283 |
T |
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