View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21042_low_29 (Length: 316)

Name: NF21042_low_29
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21042_low_29
NF21042_low_29
[»] chr7 (8 HSPs)
chr7 (20-297)||(5302224-5302501)
chr7 (20-297)||(5289814-5290091)
chr7 (20-297)||(5284036-5284313)
chr7 (20-189)||(5314947-5315116)
chr7 (20-209)||(5310214-5310402)
chr7 (20-140)||(46707105-46707225)
chr7 (213-297)||(5314678-5314762)
chr7 (215-297)||(5309861-5309946)
[»] chr5 (6 HSPs)
chr5 (20-149)||(1482069-1482198)
chr5 (20-146)||(1477878-1478004)
chr5 (20-141)||(1492052-1492173)
chr5 (20-140)||(1504862-1504982)
chr5 (20-139)||(1509009-1509129)
chr5 (20-149)||(1486546-1486675)
[»] chr1 (3 HSPs)
chr1 (20-140)||(44128459-44128579)
chr1 (20-140)||(44132664-44132784)
chr1 (20-140)||(44141086-44141206)
[»] chr3 (2 HSPs)
chr3 (20-139)||(37859481-37859600)
chr3 (35-139)||(37863522-37863626)
[»] chr2 (1 HSPs)
chr2 (20-158)||(24163907-24164045)
[»] chr8 (1 HSPs)
chr8 (20-109)||(35250727-35250816)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 5302501 - 5302224
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5302501 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 5302402  T
Q  120 tcatggatttatcacctgaagtagttataatggaatgacattagcacatcagtttttgggtattatataccaaaaccaatcacataatgatcaagataaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  5302401 tcatggatttatcacctgaagtagttataatggaatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgaccaagataaa 5302302  T
Q  220 tgtaaacgaaaagtatctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaaaaacacttacac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  5302301 tgtaaacgaaaagtatctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaagaatacttacac 5302224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 5289814 - 5290091
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5289814 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacacttggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 5289913  T
Q  120 tcatggatttatcacctgaagtagttataatggaatgacattagcacatcagtttttgggtattatataccaaaaccaatcacataatgatcaagataaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  5289914 tcatggatttatcacctgaagtagttataatggaatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgaccaagataaa 5290013  T
Q  220 tgtaaacgaaaagtatctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaaaaacacttacac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  5290014 tgtaaacgaaaagtatctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaagaatacttacac 5290091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 5284313 - 5284036
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5284313 accatgtcttgccttgcatccaatgaaggggccatgtattcacaaacactaggattttttttcaaaatttcttctgttagatacatgtatctcctcttga 5284214  T
Q  120 tcatggatttatcacctgaagtagttataatggaatgacattagcacatcagtttttgggtattatataccaaaaccaatcacataatgatcaagataaa 219  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  5284213 tcatagatttatcacctgaagtagttataataaaatgacattagcacatcagtttttgggtgatatataccaaaaccaatcacataatgatcaagataaa 5284114  T
Q  220 tgtaaacgaaaagtatctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaaaaacacttacac 297  Q
    | |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||    
T  5284113 tataaacgaaaagtatctaataatatttatatactcaagtatatcaaaataataaatagaggagaagaatacttacac 5284036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 5315116 - 5314947
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5315116 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 5315017  T
Q  120 tcatggatttatcacctgaagtagttataatggaatgacattagcacatcagtttttgggtattatatac 189  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||| ||| |||||||    
T  5315016 tcatagatttatcacctgaagtagttataatgaaatggcattagcacatcaatttttgtgtaatatatac 5314947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 5310402 - 5310214
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  5310402 accatgtcttgccttgcatccaatgaaggtgccatgtattcacaaacactaggattttctttcaaaatctcctctgttagatacatgtatctcctcttga 5310303  T
Q  120 tcatggatttatcacctgaagtagttataatggaatgacattagcacatcagtttttgggtattatataccaaaaccaatcacataatga 209  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||| |  ||| ||||||||||||||||||||    
T  5310302 tcatagatttatcacctgaagtggttataatgaaatgacattagcacattaatttttgggtaattaata-caaaaccaatcacataatga 5310214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 46707105 - 46707225
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| || | |||||| |||||||||||||||||||    
T  46707105 accatgtcttgcctggcatccaatgaaggtgccatatattcacaaacactgggattctctttcaaaatctcctatgttaggtacatgtatctcctcttga 46707204  T
Q  120 tcatggatttatcacctgaag 140  Q
    |||| ||||||||||||||||    
T  46707205 tcatagatttatcacctgaag 46707225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 5314762 - 5314678
Alignment:
Q  213 agataaatgtaaacgaaaagtatctaaaaatatttttatactcaagtttatcaaaataataaatagaggagaaaaacacttacac 297  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||    
T  5314762 agataaatgtaaacgaaaagtatctaaaaatatttatatactcaagtatatcaaaataataaatagaggagaagaatacttacac 5314678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 5309946 - 5309861
Alignment:
Q  215 ataaatgtaaacgaaaagtatctaaaaatatttttatactcaagtttatcaaaata---ataaatagaggagaaaaacacttacac 297  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||| || ||||||||    
T  5309946 ataaatgtaaaagtaaagtatctaaaaatatttttatactcaagtatatcaaaataataataaatagaggagaagaatacttacac 5309861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 1482198 - 1482069
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  1482198 accatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttcagtaagatacatgtatctcctcttga 1482099  T
Q  120 tcatggatttatcacctgaagtagttataa 149  Q
    |||| |||||||||||||||||||||||||    
T  1482098 tcatagatttatcacctgaagtagttataa 1482069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 1478004 - 1477878
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  1478004 accatgtcctgcctagcatccaatgacggtgccatgtattcacatacacttggattttctttcaaaatttcttcggtaagatacatgtatctcctcttga 1477905  T
Q  120 tcatggatttatcacctgaagtagtta 146  Q
    |||||||||||||||||||||||||||    
T  1477904 tcatggatttatcacctgaagtagtta 1477878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 1492173 - 1492052
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||| || |||||||||||||||||||| || ||||    
T  1492173 accatgtcttgtctagcatccaatgaaggtgccatgtattcacaaacattaggattctcttttaaaatctcctctgttagatacatgtatcttcttttga 1492074  T
Q  120 tcatggatttatcacctgaagt 141  Q
    |||||||||| |||||||||||    
T  1492073 tcatggatttgtcacctgaagt 1492052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 1504982 - 1504862
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||||||||| ||||| |    
T  1504982 accatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactgggattctcttttaaaatctcctctgttaggtacatgtatcttctcttaa 1504883  T
Q  120 tcatggatttatcacctgaag 140  Q
    |||| ||||||||||||||||    
T  1504882 tcatagatttatcacctgaag 1504862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 1509129 - 1509009
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctctt-g 118  Q
    |||||||||||||||||||||||||| || ||| | ||  |||||||| | ||||| ||||||||||| |||||||| | |||||||||||||||||| |    
T  1509129 accatgtcttgcctagcatccaatgatggtgccgtataagcacaaacattgggattctctttcaaaatctcttctgtaatatacatgtatctcctcttag 1509030  T
Q  119 atcatggatttatcacctgaa 139  Q
    ||||| |||||||||||||||    
T  1509029 atcatcgatttatcacctgaa 1509009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 1486675 - 1486546
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||||||||||||||| ||||| | ||| ||    |||| | ||||||| |||||||||||  |||||||| | ||||||||||| |||||||    
T  1486675 accatgtcttgcctagcatccaaagaaggtgtcatataagtgcaaaaattaggattctctttcaaaatagcttctgtttggtacatgtatcttctcttga 1486576  T
Q  120 tcatggatttatcacctgaagtagttataa 149  Q
    |||| ||||| |||||| ||||| ||||||    
T  1486575 tcattgatttttcacctaaagtaattataa 1486546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 44128579 - 44128459
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||    
T  44128579 accatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttga 44128480  T
Q  120 tcatggatttatcacctgaag 140  Q
    |||| ||||||||||||||||    
T  44128479 tcatagatttatcacctgaag 44128459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 44132784 - 44132664
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||    
T  44132784 accatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttga 44132685  T
Q  120 tcatggatttatcacctgaag 140  Q
    |||| ||||||||||||||||    
T  44132684 tcatagatttatcacctgaag 44132664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 44141206 - 44141086
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||    
T  44141206 accatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgttaggtacatatatctcctcttga 44141107  T
Q  120 tcatggatttatcacctgaag 140  Q
    |||| ||||||||||||||||    
T  44141106 tcatagatttatcacctgaag 44141086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 37859481 - 37859600
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    ||||||||||| || |||||||||||||| |||||||| || || ||||| ||||| |||||||  || |||||||| |  |||||||||||| ||||||    
T  37859481 accatgtcttgtcttgcatccaatgaaggtgccatgtactcgcatacacttggattctctttcaggatctcttctgtcaagtacatgtatctcttcttga 37859580  T
Q  120 tcatggatttatcacctgaa 139  Q
    |||| || ||||||||||||    
T  37859581 tcattgacttatcacctgaa 37859600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 37863522 - 37863626
Alignment:
Q  35 gcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttgatcatggatttatcac 134  Q
    |||||||| ||||| ||||| || ||||| | ||||||||| || |||||||| ||||| || | || |||||||||| |||| ||||| ||||||||||    
T  37863522 gcatccaacgaaggtgccatatactcacataaactaggattctccttcaaaatctcttcagtcaaatgcatgtatctcttcttaatcatagatttatcac 37863621  T
Q  135 ctgaa 139  Q
    |||||    
T  37863622 ctgaa 37863626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 24163907 - 24164045
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtatctcctcttga 119  Q
    |||||||||||||||| |||||| ||||| ||||| ||    || |   ||||||| ||||||||||| ||||| ||||| |||||||||||||||||||    
T  24163907 accatgtcttgcctagtatccaaagaaggtgccatataagtgcacaagttaggattctctttcaaaatctcttcggttaggtacatgtatctcctcttga 24164006  T
Q  120 tcatggatttatcacctgaagtagttataatggaatgac 158  Q
    |||| | |||||||||| || ||||||||| | ||||||    
T  24164007 tcatagttttatcacctaaaatagttataaagaaatgac 24164045  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 35250816 - 35250727
Alignment:
Q  20 accatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttagatacatgtat 109  Q
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T  35250816 accatatcttgtcttgcatccaatgatggtgccatgtaagcacacatattgggattttctttcagaatttcctctgttaaatgcatgtat 35250727  T

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