View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_3 (Length: 586)
Name: NF21042_low_3
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 20389317 - 20389623
Alignment:
| Q |
18 |
ttaacatgttctttgacttggaatcttcagctaaaagcttagcttgtgaaatactcaagaaaggttctattcaaagtcaaaagcttcatgatttgtatca |
117 |
Q |
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| T |
20389317 |
ttaacatgttctttgacttggaatcttcagctaaaagcttagcctgtgaaatactcaagaaaggttctattcaaagtcaaaagcttcatgatttgtatca |
20389416 |
T |
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| Q |
118 |
aacttgcaaaaaattggttgaaaacaagaatttagaatacccttttgttcaaattattagtatgaatcatgtaatggcattagatcaatttggttttcaa |
217 |
Q |
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| T |
20389417 |
aacttgcaaaaaattggttgaaaacaagaatttggaatacccttttgttcaaattattagtatgaatcatgtaatggcattagatcaatttggttttcaa |
20389516 |
T |
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| Q |
218 |
gaaaataaagttgaagcttcacatgtgtctatatcaagtatctcaaagttgcctcaaatttcaagccttttgaatagatcatcagagttagagctggtag |
317 |
Q |
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| T |
20389517 |
gaaaataaagttgaagcttcacatgtctctatatcaagtatctcaaagttgcctcaaatttcaagccttttgaatagatcatcagagttagagttggaag |
20389616 |
T |
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| Q |
318 |
taacaac |
324 |
Q |
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| T |
20389617 |
taacaac |
20389623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 356 - 526
Target Start/End: Original strand, 20389655 - 20389825
Alignment:
| Q |
356 |
gatttaattttttcaacaacacaaactctttcttcatggacactagagactaaaattagcaaggtttgggtggtatttgaagatgaagttcataatgaat |
455 |
Q |
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| T |
20389655 |
gatttaattttttcaacaacaccaactctttcttcatggacactagagactaaaattagcaaggtttgggtggtatttgaagatgaagttcataatgaat |
20389754 |
T |
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| Q |
456 |
cacaaatccttccaacacaataaaggcttggaaattggaagtgttaattatgctataagtgatgtagaaag |
526 |
Q |
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| T |
20389755 |
cacaaatccttccaacacaataaaggcttggaaattggaagttttaattatgctataagtgatgtagaaag |
20389825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 574
Target Start/End: Original strand, 20389843 - 20389872
Alignment:
| Q |
545 |
gacttgaaagtgatgttaaaagttaatatt |
574 |
Q |
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| T |
20389843 |
gacttgaaagtgatgttaaaagttaatatt |
20389872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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