View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21042_low_36 (Length: 283)

Name: NF21042_low_36
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21042_low_36
NF21042_low_36
[»] chr1 (3 HSPs)
chr1 (17-260)||(36120051-36120296)
chr1 (17-174)||(25252659-25252817)
chr1 (17-170)||(7093212-7093365)
[»] chr8 (1 HSPs)
chr8 (17-240)||(18186671-18186895)
[»] chr4 (6 HSPs)
chr4 (17-259)||(24838460-24838704)
chr4 (77-171)||(5917159-5917255)
chr4 (58-142)||(52627275-52627359)
chr4 (17-124)||(27933626-27933733)
chr4 (77-124)||(27933471-27933518)
chr4 (17-142)||(38444978-38445104)
[»] chr2 (2 HSPs)
chr2 (20-166)||(15142931-15143079)
chr2 (17-170)||(33276719-33276873)
[»] chr5 (2 HSPs)
chr5 (17-206)||(31852020-31852210)
chr5 (17-167)||(28350138-28350291)
[»] chr6 (3 HSPs)
chr6 (68-260)||(26351735-26351929)
chr6 (24-166)||(10441755-10441899)
chr6 (74-174)||(9282305-9282410)
[»] chr7 (2 HSPs)
chr7 (56-170)||(26081465-26081581)
chr7 (56-170)||(26105252-26105368)
[»] scaffold0515 (1 HSPs)
scaffold0515 (24-109)||(1821-1906)
[»] scaffold0317 (1 HSPs)
scaffold0317 (24-109)||(17802-17887)
[»] scaffold0306 (1 HSPs)
scaffold0306 (24-109)||(1821-1906)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 36120051 - 36120296
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcatttt--ggtggttgaaagctta 114  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
36120051 aatgagcggaataacaaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacatttattttttggtggttgaaagctta 36120150  T
115 taatgtcaatattgatttaaactctcatgtgatggtcgagcccttttgtttgtatgagcaacgattaagttttcttgtttccctgctttttggtttcgtt 214  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||    
36120151 taatgtcaatattggtttaaactctaatgtgatggtcgagcccttttgtttgtatgaacatcgattaagttttcttgtttcccagctttttggtttcgtt 36120250  T
215 ctgaccgtaaattttagaggttctttatgatacactttgtgttagt 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
36120251 ctgaccgtaaactttagaggttctttatgatacactttgtgttagt 36120296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 25252659 - 25252817
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttata 116  Q
    |||||||| ||||||| |||||| |||  ||||||||| |||||||| ||  || | || ||||||||   |||||| ||||  ||| ||||||||||||    
25252659 aatgagcgaaataatagagttttcaagaataaggaaaatacaattcatcagttgctagaaaaagtcaaataacattcttttttatggctgaaagcttata 25252758  T
117 atgtcaatattgatttaaactctc--atgtgatggtcgagcccttttgtttgtatgagca 174  Q
    |||||||| ||  ||  | || ||  ||||| |||||||||||||||| |||||||||||    
25252759 atgtcaatcttagttgtagctttcatatgtgttggtcgagcccttttg-ttgtatgagca 25252817  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 7093365 - 7093212
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttata 116  Q
    |||||||  |||||||||||||| |||  ||||||||| | |||||| ||  |  | || ||||||||| ||||||| |||| |||| |||||||||||     
7093365 aatgagcaaaataataaagttttcaagaataaggaaaatataattcatcagctactagaaaaagtcaagttacattcttttttgtggctgaaagcttatg 7093266  T
117 atgtcaatattgatttaaactctc--atgtgatggtcgagcccttttgtttgtatg 170  Q
    |||||  | ||| || ||||| ||  ||||||  |||||||| |||||||||||||    
7093265 atgtc--tcttggttcaaactttcatatgtgaaagtcgagccattttgtttgtatg 7093212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 18186895 - 18186671
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttata 116  Q
    |||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
18186895 aatgagcggaataatagaggtttcaaggctaaggaaaacacaattcaccagatgttcgataaagtcaagttacattcattttggtggttgaaagcttata 18186796  T
117 atgtcaatattgatttaaactctc--atgtgatggtcgagcccttttgtttgtatgagcaacgattaagttttcttgtttccctgctttttggtttcgtt 214  Q
    || ||||| ||| |||||||||||  ||||| ||||||||||||||||||||||||  || | | ||||||||||||||||| || ||||| ||||| |     
18186795 atctcaatcttggtttaaactctcatatgtggtggtcgagcccttttgtttgtatggtcatcaactaagttttcttgtttccttg-ttttttgtttcatc 18186697  T
215 ctgaccgtaaattttagaggttcttt 240  Q
    ||||  ||||||||||||||||||||    
18186696 ctgaatgtaaattttagaggttcttt 18186671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 24838460 - 24838704
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttata 116  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||| || ||||| |||||||||||  ||||||||||||||||||||||||||||||    
24838460 aatgagaggaaaaatagagtttttaaggctaaggaaaacacaattcatcagatgttagataaagtcaaattacattcattttggtggttgaaagcttata 24838559  T
117 atgtcaatattgatttaaactctc--atgtgatggtcgagcccttttgtttgtatgagcaacgattaagttttcttgtttccctgctttttggtttcgtt 214  Q
    |||||||| |||  ||||||||||  ||||| ||||||||| |||||||||||||| ||| ||| ||||||||||||||||  |  |||||||||||||     
24838560 atgtcaatcttgggttaaactctcatatgtgttggtcgagctcttttgtttgtatgggcatcgactaagttttcttgtttcttttgtttttggtttcgtg 24838659  T
215 ctgaccgtaaattttagaggttctttatgatacactttgtgttag 259  Q
     |||  ||||| ||| |||||||||| ||  |||| |||||||||    
24838660 ttgattgtaaaattttgaggttctttctggcacaccttgtgttag 24838704  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 5917255 - 5917159
Alignment:
77 aaagtcaaggtacattcattttggtggttgaaagcttataatgtcaatattgatttaaactctc--atgtgatggtcgagcccttttgtttgtatga 171  Q
    ||||||||  ||||||| |||| |||| ||||| |||||||||||||| ||| |||||||| ||  ||||| |||||||| ||||||||||||||||    
5917255 aaagtcaaattacattcttttttgtggctgaaaacttataatgtcaattttggtttaaactttcatatgtggtggtcgagaccttttgtttgtatga 5917159  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 52627359 - 52627275
Alignment:
58 aattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttataatgtcaatattgatttaaactctcat 142  Q
    ||||||||||||||| |||||||||||| ||| |||| |||| ||||||||| |||||||| || || ||| |||||||| ||||    
52627359 aattcaccatatgtttgataaagtcaagttactttcactttgatggttgaaaacttataatatcgattttggtttaaactatcat 52627275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 27933733 - 27933626
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttata 116  Q
    |||||||| ||||||| |||||| |||  ||||||||| |||||||| ||  |  | || ||| ||||| ||||||| ||||||||| |||||| |||||    
27933733 aatgagcgaaataatagagttttcaagaataaggaaaatacaattcatcaactactagaaaaaatcaagttacattctttttggtggctgaaagtttata 27933634  T
117 atgtcaat 124  Q
    ||||||||    
27933633 atgtcaat 27933626  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 27933471 - 27933518
Alignment:
77 aaagtcaaggtacattcattttggtggttgaaagcttataatgtcaat 124  Q
    ||||| ||| ||||||| ||||||||| ||||||||||||||||||||    
27933471 aaagtgaagttacattctttttggtggctgaaagcttataatgtcaat 27933518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 38445104 - 38444978
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttg-gtggttgaaagcttat 115  Q
    |||||||| ||||||| |||||| |||  |||||| || |||||||| ||  |||| || ||||||||| ||||||  ||||  |||| ||||| |||||    
38445104 aatgagcgaaataatagagttttcaagaataaggagaatacaattcatcaactgttagaaaaagtcaagttacattttttttttgtggctgaaaacttat 38445005  T
116 aatgtcaatattgatttaaactctcat 142  Q
    ||||||||| ||| || ||||| ||||    
38445004 aatgtcaattttggttcaaactttcat 38444978  T

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Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 15143079 - 15142931
Alignment:
20 gagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttataatg 119  Q
    ||||||||||| | |||||| ||||| ||||||| |||||||||| | ||||| |||||||||||| ||||||||||||||||||| |||||||||||||    
15143079 gagcggaataacagagttttcaaggccaaggaaaccacaattcacgagatgttagataaagtcaagttacattcattttggtggttaaaagcttataatg 15142980  T
120 tcaatattgatttaaactctc--atgtgatggtcgagcccttttgtttg 166  Q
    ||||| ||| |||||||||||  ||||| |||||||||| |||||||||    
15142979 tcaatcttggtttaaactctcatatgtggtggtcgagccattttgtttg 15142931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 33276719 - 33276873
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttata 116  Q
    |||||||| ||||||| |  ||| |||  ||||||||| |||||||| ||  |||| || |||||||||  |||||  ||||||||| ||||||||||||    
33276719 aatgagcgaaataatagaaatttcaagaataaggaaaatacaattcatcagttgttagaaaaagtcaagtcacattt-ttttggtggctgaaagcttata 33276817  T
117 atgtcaatattgatttaaactctc--atgtgatggtcgagcccttttgtttgtatg 170  Q
    || ||||| ||  || ||||| ||  ||||| |||||||||| |||||||||||||    
33276818 atatcaatttttgttcaaactttcatatgtggtggtcgagccattttgtttgtatg 33276873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 31852020 - 31852210
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttata 116  Q
    |||||||||||||| | |||||| |||| |||| |||| ||||||||| | ||||| || ||||||||| |||| |||||||||||||||||| | | ||    
31852020 aatgagcggaataacagagttttcaaggttaagaaaaatacaattcacaagatgttagacaaagtcaagttacactcattttggtggttgaaaacatcta 31852119  T
117 atgtcaatattgatttaaactctcatgtg-atggtcgagcccttttgtttgtatgagcaacgattaagttttcttgtttccctgctttttg 206  Q
    |||||||| |||| |||||||||||| ||  ||||||||||| ||||||||||||| || ||  ||||||||||||||||| || ||||||    
31852120 atgtcaatcttgacttaaactctcatatgtgtggtcgagcccatttgtttgtatgaacatcggctaagttttcttgtttccttgttttttg 31852210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 28350138 - 28350291
Alignment:
17 aatgagcggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcga-taaagtcaaggtacattcattttggtggttgaaagcttat 115  Q
    |||||||| ||||| | |||||| |||||| ||||||||||||||||| | |||||  | |||||||||| ||||||||||||| ||||||||| |||||    
28350138 aatgagcgaaataacatagttttcaaggctgaggaaaacacaattcactagatgttaaaataaagtcaagttacattcattttgatggttgaaaacttat 28350237  T
116 aatgtcaatattgatttaaactctc--atgtgatggtcgagcccttttgtttgt 167  Q
    ||||||||| ||| |||||||||||  || || ||||||||||||||| |||||    
28350238 aatgtcaattttggtttaaactctcatatatggtggtcgagcccttttatttgt 28350291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 68 - 260
Target Start/End: Original strand, 26351735 - 26351929
Alignment:
68 atgttcgataaagtcaaggtacattcattttggtggttgaaagcttataatgtcaatattgatttaaactctca--tgtgatggtcgagcccttttgttt 165  Q
    ||||| |||||||||||  ||||||| ||||||||||||||| |||||||||||||| ||  |||||||||| |  ||||||||||||||  ||||||||    
26351735 atgttagataaagtcaaattacattcgttttggtggttgaaatcttataatgtcaatctttgtttaaactcttatgtgtgatggtcgagctattttgttt 26351834  T
166 gtatgagcaacgattaagttttcttgtttccctgctttttggtttcgttctgaccgtaaattttagaggttctttatgatacactttgtgttagt 260  Q
    ||||||||| | | || ||| |||||| ||  |  ||||||||||||| || |||||||||||| | |||||||| |||||||  ||||||||||    
26351835 gtatgagcatcaactacgttgtcttgtatcttttgtttttggtttcgtgctaaccgtaaatttttggggttctttctgatacatcttgtgttagt 26351929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 10441899 - 10441755
Alignment:
24 ggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttataatgtcaa 123  Q
    |||| |||| |||||| |||||||||||||  ||||||||||||||| | |||||||||||  ||||||| |||| || ||||||||||| |||||| ||    
10441899 ggaacaatagagttttcaaggctaaggaaactacaattcaccatatgctagataaagtcaaattacattcgttttagttgttgaaagcttgtaatgttaa 10441800  T
124 tattgatttaaactctc--atgtgatggtcgagcccttttgtttg 166  Q
    | ||| |||||||||||  ||||||||||| ||||||||||||||    
10441799 tcttggtttaaactctcatatgtgatggtcaagcccttttgtttg 10441755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 9282410 - 9282305
Alignment:
74 gataaagtcaaggtacattcattttggtggttgaaagcttata---atgtcaatattgatttaaactctc--atgtgatggtcgagcccttttgtttgta 168  Q
    |||||||||||  ||||||| ||||||||||||||||||||||   |||||||| ||| |||||||||||  ||||| |||||||||| ||| |||||||    
9282410 gataaagtcaaattacattcgttttggtggttgaaagcttataatcatgtcaatcttggtttaaactctcgtatgtggtggtcgagccatttagtttgta 9282311  T
169 tgagca 174  Q
    ||||||    
9282310 tgagca 9282305  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 26081465 - 26081581
Alignment:
56 acaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttataatgtcaatattgatttaaactctc--atgtgatggtcga 153  Q
    |||||||| ||| || | || ||||||||| ||||||| ||||||||| ||||||||||||||||| || ||| |  ||||||||  || || || || |    
26081465 acaattcatcatttgctagaaaaagtcaagttacattctttttggtggctgaaagcttataatgtctatcttggtgcaaactctcatatatgttgctcaa 26081564  T
154 gcccttttgtttgtatg 170  Q
    |||||||||||||||||    
26081565 gcccttttgtttgtatg 26081581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 26105252 - 26105368
Alignment:
56 acaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaagcttataatgtcaatattgatttaaactctc--atgtgatggtcga 153  Q
    |||||||| ||| || | || ||||||||| ||||||| ||||||||| ||||||||||||||||| || ||| |  ||||||||  || || || || |    
26105252 acaattcatcatttgctagaaaaagtcaagttacattctttttggtggctgaaagcttataatgtctatcttggtgcaaactctcatatatgttgctcaa 26105351  T
154 gcccttttgtttgtatg 170  Q
    |||||||||||||||||    
26105352 gcccttttgtttgtatg 26105368  T

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Target: scaffold0515 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 1906 - 1821
Alignment:
24 ggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaa 109  Q
    |||| |||| |||||| |||| ||||||||   |||||||||||||| | | |||||||||  ||||||||||||| |||||||||    
1906 ggaacaatagagttttcaagggtaaggaaacttcaattcaccatatgctaggtaaagtcaaattacattcattttgatggttgaaa 1821  T

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Target: scaffold0317 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 17802 - 17887
Alignment:
24 ggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaa 109  Q
    |||| |||| |||||| |||| ||||||||   |||||||||||||| | | |||||||||  ||||||||||||| |||||||||    
17802 ggaacaatagagttttcaaggataaggaaacttcaattcaccatatgctaggtaaagtcaaattacattcattttgatggttgaaa 17887  T

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Target: scaffold0306 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 1906 - 1821
Alignment:
24 ggaataataaagtttttaaggctaaggaaaacacaattcaccatatgttcgataaagtcaaggtacattcattttggtggttgaaa 109  Q
    |||| |||| |||||| |||| ||||||||   |||||||||||||| | | |||||||||  ||||||||||||| |||||||||    
1906 ggaacaatagagttttcaagggtaaggaaacttcaattcaccatatgctaggtaaagtcaaattacattcattttgatggttgaaa 1821  T

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