View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_38 (Length: 276)
Name: NF21042_low_38
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_38 |
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| [»] scaffold0248 (1 HSPs) |
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Alignment Details
Target: scaffold0248 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 12495 - 12748
Alignment:
| Q |
16 |
caattcctactatcaatcaccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcaccactccaaatcgaaaggt |
115 |
Q |
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| T |
12495 |
caattcctacaatcaatcaccttctcaatctttccaatttatgcagagaattcataaaacgcttcaacaatctcagcatcaccactccaaatcgaa-ggt |
12593 |
T |
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| Q |
116 |
tgttgcctttaggattctaggcaacaactgccatatattttgtagcttgcaataatctagaattctaggcaatgcattgagaaaattattttgtggatta |
215 |
Q |
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| T |
12594 |
tgttgcctctaggattctaggcaacaacagccatatattttgtagcttgcaataatctaggattctaggcaatgcattaagaaaattcttttgtggatta |
12693 |
T |
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| Q |
216 |
gatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatca |
270 |
Q |
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| T |
12694 |
gatataaaacttgcatattcaggatcgctttattctggtattaatcttctcatca |
12748 |
T |
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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 32798210 - 32798302
Alignment:
| Q |
178 |
ttctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatca |
270 |
Q |
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| T |
32798210 |
ttctaggcaatgcattgagaaaactcttttgtggatcatatataaaacttgcatatttaggatcgctttcttctggtattaatcttctcatca |
32798302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 32803863 - 32803955
Alignment:
| Q |
178 |
ttctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatca |
270 |
Q |
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| T |
32803863 |
ttctaggcaatgcattgagaaaactcttttgtggatcatatataaaacttgcatatttaggatcgctttcttctggtattaatcttctcatca |
32803955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 32307701 - 32307609
Alignment:
| Q |
178 |
ttctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatca |
270 |
Q |
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| T |
32307701 |
ttctaggcaatgcattgagaaaactcttttgtggatcatatataaaacttgcatatttaggatcactttcttctggtatttatcttctcatca |
32307609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 32307784 - 32307720
Alignment:
| Q |
33 |
caccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcac |
97 |
Q |
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| T |
32307784 |
caccatctcaatctttccaatttcagcagagaattcataaaacgcttcaacaatctcagcatcac |
32307720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 32798127 - 32798191
Alignment:
| Q |
33 |
caccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcac |
97 |
Q |
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| T |
32798127 |
caccatctcaatctttccaatttcagcagagaattcataaaacgcttcaacaatctcagcatcac |
32798191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 32803780 - 32803844
Alignment:
| Q |
33 |
caccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcac |
97 |
Q |
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| T |
32803780 |
caccatctcaatctttccaatttcagcagagaattcataaaacgcttcaacaatctcagcatcac |
32803844 |
T |
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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 7436812 - 7436907
Alignment:
| Q |
16 |
caattcctactatcaatcaccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcaccactccaaatcgaa |
111 |
Q |
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| T |
7436812 |
caattcctactatcaatcaccttctcaatctttccaatttcagcagagaattgataaaatgcttcgacaatctcagcatcacccgtccaaatcgaa |
7436907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 7436998 - 7437056
Alignment:
| Q |
180 |
ctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcagg |
238 |
Q |
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| T |
7436998 |
ctaggcaatgcattgagaaaatacttttgtggatcagatatgaaacttgtatattcagg |
7437056 |
T |
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