View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21042_low_40 (Length: 260)
Name: NF21042_low_40
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 31590660 - 31590428
Alignment:
| Q |
6 |
gcacacactgacacagacaagttgacactagtnnnnnnntttaaaaataaattaattgaacgtaatcacatgttttggcatcatgtctacgtgtcagaca |
105 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31590660 |
gcacacaatgacacggacaagttgacaccagtaaaaaaatttaaaaataaattaattgaacttaatcacatgtttcagcatcatgtctacgtgtcagaca |
31590561 |
T |
|
| Q |
106 |
cctttttgtttttaagctgacacaccttatacaccttcaatcagaagtgtcagtgctacatagcagcagtagcacataactaaatacacaaaaatcatag |
205 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
31590560 |
cctttttctttttaagctgacacaccttacacaccttcaatcagaagtgtcagtgctacata---gcagtagcacataactgaatacacaaaaatcatag |
31590464 |
T |
|
| Q |
206 |
taatccacaatcaaaacaatgatcaagcacatattc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31590463 |
taatccacaatcaaaacaatgatcaagcacatattc |
31590428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 5243304 - 5243337
Alignment:
| Q |
136 |
acaccttcaatcagaagtgtcagtgctacatagc |
169 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
5243304 |
acaccttcaatcagaagtgtcggtgctacatagc |
5243337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 35871221 - 35871177
Alignment:
| Q |
48 |
aaaaataaattaattgaacgtaatcacatgttttggcatcatgtc |
92 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||| |||||||| |
|
|
| T |
35871221 |
aaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtc |
35871177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 35053715 - 35053683
Alignment:
| Q |
136 |
acaccttcaatcagaagtgtcagtgctacatag |
168 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
35053715 |
acaccttcaatcagaagtgtcggtgctacatag |
35053683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 35070032 - 35070000
Alignment:
| Q |
136 |
acaccttcaatcagaagtgtcagtgctacatag |
168 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
35070032 |
acaccttcaatcagaagtgtcggtgctacatag |
35070000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 24445422 - 24445378
Alignment:
| Q |
48 |
aaaaataaattaattgaacgtaatcacatgttttggcatcatgtc |
92 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||| |||||||| |
|
|
| T |
24445422 |
aaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtc |
24445378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University