View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_43 (Length: 251)
Name: NF21042_low_43
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_43 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8279 - 8040
Alignment:
| Q |
1 |
taatattaactagagttcagaaccacagttacaaaggttagacaacattcaaaacaaaacatgatagaaattagaacactaccatacaacatcatagtta |
100 |
Q |
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| T |
8279 |
taatattacctaaagttctgaaccacagttacaaatgttagacaacattcaaaacaaaacatgatagaaattagaacactaccatacaatatcatagtta |
8180 |
T |
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| Q |
101 |
gttaaacatcaaaaaacaactgaaaatgcaagggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatcactgaagagcttcacttcc |
200 |
Q |
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| T |
8179 |
gttaaacagcaaaagacaatttaaagtgcaagggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatcactgaagagcttcacttcc |
8080 |
T |
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| Q |
201 |
tctgctcttcatcatcaaagttgaagagttcagatttcat |
240 |
Q |
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| T |
8079 |
tctgctcttcatcatcaaagttgaagagttcagatttcat |
8040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 12026232 - 12026421
Alignment:
| Q |
1 |
taatattaactagagttcagaaccacagttacaaaggttagacaacattcaaaacaaaacatgatagaaattagaacactaccatac------aacatca |
94 |
Q |
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| T |
12026232 |
taatattaactaaagttccgaaccacagatacaaatgttagacatcattcaaaacaaaacatgatagaaattagaaccctaccataccgatacaacatca |
12026331 |
T |
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| Q |
95 |
tagttagttaaacatcaaaaaacaactgaaaatgcaagggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatcact |
184 |
Q |
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| T |
12026332 |
tagttagttaaacatgaaaagacaatttaaagtgcaagggaatcattcattcatgaaagaaccatcaataccctcaaaaaatggatcact |
12026421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 18189766 - 18189679
Alignment:
| Q |
14 |
agttcagaaccacagttacaaaggttagacaacattcaaaacaaaacatgatagaaattagaa-cactaccatacaacatcatagttagttaa |
105 |
Q |
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| T |
18189766 |
agttctgaaccacagttacaaatgttagccaacattcaaaaca-----tgatcaaaattagaatcactaccttacaacatcatagttagttaa |
18189679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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