View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_45 (Length: 245)
Name: NF21042_low_45
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 27806376 - 27806187
Alignment:
| Q |
37 |
ggtagaaaaatagcagcaagattatttggtgtattgtgggctat---gcataagtggtggacccgagagaatttataaggttaatatgtgaa-gcaaata |
132 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
27806376 |
ggtagaaaaatagcggcaagattatttggtgtattgtgggctatcatgcataagtggtggacccgagagaatttacaaggttaatatgtgaaagcaaata |
27806277 |
T |
|
| Q |
133 |
taagtgccagagagccatataaaaaggggagcgctacacaacagacttgattgacgatttggcacaacagaagcta-gtcttggattcac |
221 |
Q |
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|||||| |||||||||||||||||||||| ||| ||| |||||| || ||||||| |||||||||| ||| ||||| ||||||||||||| |
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| T |
27806276 |
taagtgtcagagagccatataaaaaggggggcgttacgcaacagcctggattgacaatttggcacagcaggagctaggtcttggattcac |
27806187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27808689 - 27808649
Alignment:
| Q |
1 |
ggcacttgtctagcttaatgagaaaaaggagttatgggtag |
41 |
Q |
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| T |
27808689 |
ggcacttatctaacttaatgagaaaaaggagttatgggtag |
27808649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 174
Target Start/End: Original strand, 16880490 - 16880652
Alignment:
| Q |
6 |
ttgtctagcttaatgagaaaaaggagttatgggtagaaaaatagcagcaagattatttggtgtattgtgggctatgcataagtggtggacccgagagaat |
105 |
Q |
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||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||| |||||||| ||||||| |
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| T |
16880490 |
ttgtctagcctaatgagaaaacggagttatgagtagaaaaatagcagtaagattatttggggtattt--ggctatgcataagctgtggacccaagagaat |
16880587 |
T |
|
| Q |
106 |
ttataaggttaatatgtgaagcaaatataagtgccagagagccatataaaaaggggagcgctacacaac |
174 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
16880588 |
ttacaaggttaatatgtgaagcaaatataagtgcc--agagccatataaaaaggg--gcgctacacaac |
16880652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 174
Target Start/End: Original strand, 17038180 - 17038342
Alignment:
| Q |
6 |
ttgtctagcttaatgagaaaaaggagttatgggtagaaaaatagcagcaagattatttggtgtattgtgggctatgcataagtggtggacccgagagaat |
105 |
Q |
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||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||| |||||||| ||||||| |
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| T |
17038180 |
ttgtctagcctaatgagaaaacggagttatgagtagaaaaatagcagtaagattatttggggtattt--ggctatgcataagctgtggacccaagagaat |
17038277 |
T |
|
| Q |
106 |
ttataaggttaatatgtgaagcaaatataagtgccagagagccatataaaaaggggagcgctacacaac |
174 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
17038278 |
ttacaaggttaatatgtgaagcaaatataagtgcc--agagccatataaaaaggg--gcgctacacaac |
17038342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 21914730 - 21914575
Alignment:
| Q |
1 |
ggcacttgtctagcttaatgagaaaaaggagttatgggtagaaaaatagcagcaagattatttggtgtattgtgggctatgcataagtggtggacccgag |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||| |
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| T |
21914730 |
ggcacttgtctagcctaataagaaaaaggagttatgagtagaaaaatagcagcaagattatttggtgcat--tgggctatgcataatttgtggacccgag |
21914633 |
T |
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| Q |
101 |
agaatttataagg--ttaatatgtgaagcaaatataagtgccagagagccatataaaaag |
158 |
Q |
| |
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|||||| | |||| ||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
21914632 |
agaattaacaagggattaatatgtgaagaaaatataagtgcc--agagccatataaaaag |
21914575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 28956528 - 28956663
Alignment:
| Q |
21 |
agaaaaaggagttatgggtagaaaaatagcagcaagattatttggtgtattgtgggctatgcataagtggtggacccgagagaatttata--aggttaat |
118 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||| | ||||||||| | | || ||||| |
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| T |
28956528 |
agaaaagggagttatgagtagaaaaatagcagcaagattatttggtgtat--tgggctatacataatttgtggatcggagagaattaacaagagattaat |
28956625 |
T |
|
| Q |
119 |
atgtgaagcaaatataagtgccagagagccatataaaaag |
158 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||| |
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| T |
28956626 |
ttgtgaagaaaatataagtgc--gagagccatataaaaag |
28956663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 43682839 - 43683012
Alignment:
| Q |
1 |
ggcacttgtctagcttaatgagaaaaaggagttatgggtagaaaaatagcagcaagattatttggtgtattgtgggctatgcataagtggtggacccgag |
100 |
Q |
| |
|
|||||| ||||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
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| T |
43682839 |
ggcactcgtctagcctaataagaaaaatgagttatgagtagaaaaatagcagcaagattatttggtgtat--tgggctatgcataatttgtggacccgag |
43682936 |
T |
|
| Q |
101 |
agaatttataagg--ttaatatgtgaagcaaatataagtgccagagagccatataaaaagg-ggagcgctacacaaca |
175 |
Q |
| |
|
|||||| | |||| ||||||||||||| |||||||||| || ||||||||||||||||| || ||||||||||||| |
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|
| T |
43682937 |
agaattaacaagggattaatatgtgaagaaaatataagttcc--agagccatataaaaaggaggggcgctacacaaca |
43683012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 34857332 - 34857158
Alignment:
| Q |
2 |
gcacttgtctagcttaatgagaaaaaggagttatgggtagaaaaatagcagcaagattatttggtgtattgtgggctatgcataagtggtggacccgaga |
101 |
Q |
| |
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||||||||||| | |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||| |
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| T |
34857332 |
gcacttgtctaacctaataagaaaaaggatttatgagtagaaaaatagcagcaagattatttggtgtat--tgggctatgtataatttgtggacccgaga |
34857235 |
T |
|
| Q |
102 |
gaatttataagg--ttaatatgtgaag-caaatataagtgccagagagccatataaaaagg-ggagcgctacacaacag |
176 |
Q |
| |
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||||| | |||| |||| |||||||| ||||||||||||| ||||||||||||||||| || |||||||| ||||| |
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| T |
34857234 |
gaattaacaagggattaacatgtgaagaaaaatataagtgcc--agagccatataaaaaggaggggcgctacataacag |
34857158 |
T |
|
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