View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21042_low_47 (Length: 240)

Name: NF21042_low_47
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21042_low_47
NF21042_low_47
[»] scaffold0504 (1 HSPs)
scaffold0504 (1-222)||(8497-8725)
[»] chr7 (2 HSPs)
chr7 (4-113)||(12025915-12026017)
chr7 (151-223)||(1885603-1885675)
[»] chr1 (2 HSPs)
chr1 (4-60)||(18189947-18190003)
chr1 (139-175)||(18945971-18946007)
[»] chr6 (2 HSPs)
chr6 (137-188)||(785382-785433)
chr6 (147-188)||(5579735-5579776)
[»] chr2 (3 HSPs)
chr2 (137-188)||(14450705-14450756)
chr2 (139-176)||(17895823-17895860)
chr2 (138-174)||(31300497-31300533)
[»] chr4 (2 HSPs)
chr4 (137-187)||(37496786-37496836)
chr4 (142-188)||(13307947-13307993)
[»] chr5 (1 HSPs)
chr5 (140-180)||(9031879-9031919)
[»] chr3 (1 HSPs)
chr3 (140-187)||(34834869-34834916)
[»] scaffold0024 (1 HSPs)
scaffold0024 (142-188)||(18062-18108)


Alignment Details
Target: scaffold0504 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8497 - 8725
Alignment:
Q  1 tttgatgcttcaactgaaaatgaagtttgtgtcatgttctgtaagtgaaaaaacttcattatatatatgttataggatccaatacaacacatgttgacca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||| ||||||    
T  8497 tttgatgcttcaactgaaaatgaagtttgtgtcatattctgtaagtgaaaaaactttattatctatattttataggatccaatccaacacatgctgacca 8596  T
Q  101 agtgattgaattgaattggtcagt-------ataatgctcctaacctctgttgcacggacacttttgattgaaggcatgtcctggtgtctgacactgaca 193  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  8597 agtgattgaattgaattggtcagtataaggcataatgctcctaacctctgttgcacggacacttctgattgaaggcatgtcccggtgtctgacactgaca 8696  T
Q  194 cgacaaccacacttgtggttacattgaat 222  Q
    |||||||||||||||||||||||||||||    
T  8697 cgacaaccacacttgtggttacattgaat 8725  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 12026017 - 12025915
Alignment:
Q  4 gatgcttcaactgaaaatgaagtttgtgtcatgttctgtaagtgaaaaaacttcattatatatatgttataggatccaatacaacacatgttgaccaagt 103  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||| ||||||||| || ||||||    
T  12026017 gatgcttgaactgaaaatgaagtttgtgtcatattctgtaagtgaaaaaacttcattat-------ctataggatccaatccaacacatggtgcccaagt 12025925  T
Q  104 gattgaattg 113  Q
    ||||||||||    
T  12025924 gattgaattg 12025915  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 1885675 - 1885603
Alignment:
Q  151 gacacttttgattgaaggcatgtcctggtgtctgacactgacacgacaaccacacttgtggttacattgaatt 223  Q
    ||||||| |||||||| |  |||||||||||| |||||  |||||||| | ||||||||| ||||||||||||    
T  1885675 gacacttctgattgaacgtgtgtcctggtgtccgacaccaacacgacaccgacacttgtgattacattgaatt 1885603  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 18189947 - 18190003
Alignment:
Q  4 gatgcttcaactgaaaatgaagtttgtgtcatgttctgtaagtgaaaaaacttcatt 60  Q
    |||||||||||||||||||||||||||||  | |||||||||| |||||||||||||    
T  18189947 gatgcttcaactgaaaatgaagtttgtgttgtattctgtaagtaaaaaaacttcatt 18190003  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 18945971 - 18946007
Alignment:
Q  139 ctctgttgcacggacacttttgattgaaggcatgtcc 175  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  18945971 ctctgttgcaccgacacttctgattgaaggcatgtcc 18946007  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 785382 - 785433
Alignment:
Q  137 acctctgttgcacggacacttttgattgaaggcatgtcctggtgtctgacac 188  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||| |||||    
T  785382 acctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 785433  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 5579776 - 5579735
Alignment:
Q  147 cacggacacttttgattgaaggcatgtcctggtgtctgacac 188  Q
    ||||||||||| |||||||| |||||| ||||||||||||||    
T  5579776 cacggacacttatgattgaatgcatgttctggtgtctgacac 5579735  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 14450705 - 14450756
Alignment:
Q  137 acctctgttgcacggacacttttgattgaaggcatgtcctggtgtctgacac 188  Q
    ||||||||||||||||||||| ||||||||| | ||||| ||||||||||||    
T  14450705 acctctgttgcacggacacttctgattgaagacgtgtcccggtgtctgacac 14450756  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 17895823 - 17895860
Alignment:
Q  139 ctctgttgcacggacacttttgattgaaggcatgtcct 176  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  17895823 ctctgttgcatggacacttttgattgaaggcgtgtcct 17895860  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 31300497 - 31300533
Alignment:
Q  138 cctctgttgcacggacacttttgattgaaggcatgtc 174  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  31300497 cctctgtagcactgacacttttgattgaaggcatgtc 31300533  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 37496836 - 37496786
Alignment:
Q  137 acctctgttgcacggacacttttgattgaaggcatgtcctggtgtctgaca 187  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||| ||||    
T  37496836 acctctgttgcacggacacttatgattgaaggcgtgtcccggtgtccgaca 37496786  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 13307993 - 13307947
Alignment:
Q  142 tgttgcacggacacttttgattgaaggcatgtcctggtgtctgacac 188  Q
    ||||||||  |||||| |||||||||||||||| |||||||||||||    
T  13307993 tgttgcaccaacacttctgattgaaggcatgtcatggtgtctgacac 13307947  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 9031879 - 9031919
Alignment:
Q  140 tctgttgcacggacacttttgattgaaggcatgtcctggtg 180  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  9031879 tctgttgcacggacacttctgattgaaggcgtgtcctggtg 9031919  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 34834869 - 34834916
Alignment:
Q  140 tctgttgcacggacacttttgattgaaggcatgtcctggtgtctgaca 187  Q
    |||||||||||||||||| ||||||||||| ||||| |||||| ||||    
T  34834869 tctgttgcacggacacttctgattgaaggcgtgtcccggtgtccgaca 34834916  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 18062 - 18108
Alignment:
Q  142 tgttgcacggacacttttgattgaaggcatgtcctggtgtctgacac 188  Q
    |||||||| ||||||| ||| |||||||||||||||||||| |||||    
T  18062 tgttgcactgacacttatgagtgaaggcatgtcctggtgtccgacac 18108  T

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