View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_5 (Length: 539)
Name: NF21042_low_5
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 3174256 - 3174123
Alignment:
| Q |
17 |
atgaactattcctagtaaccctttgagttgttgtagtgacacaatgattgctgcaccagccatgaaacctaccaatgttgcctttgatagaaaatcaatc |
116 |
Q |
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| T |
3174256 |
atgaactattcctagtaaccctttgagttgttgtagtgacacaatgattgctgcaccagccatgaaacctaccaatgttgcctttgatagaaaatcaatc |
3174157 |
T |
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| Q |
117 |
acaaagcctaacctgtatacaccttcaaaggtta |
150 |
Q |
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| T |
3174156 |
acaaagcctaacctgtatacaccttcaaaggtta |
3174123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 415 - 524
Target Start/End: Complemental strand, 3173794 - 3173685
Alignment:
| Q |
415 |
ttatgctaatttatcttcttttttgttgaaaaaatataaatttgtgcatgattgattattagtaccttaatacaccaagagaagattgaaataaaccagc |
514 |
Q |
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| T |
3173794 |
ttatgctaatttatcttcttttttgttgaaaaaatataaatttgtgcatgattgattattagtaccttaatacaccaagagaagattggaataaaccagc |
3173695 |
T |
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| Q |
515 |
aaagaaagtg |
524 |
Q |
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| T |
3173694 |
aaagaaagtg |
3173685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 3173940 - 3173869
Alignment:
| Q |
310 |
tatactaaaatattatgaaatgatttttagttgatttcaataagatttt-agaataa-ttttgaataagcac |
379 |
Q |
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| T |
3173940 |
tatactaaaatattatgaaatgatttttagtttatttcaataagattttcataataatttttgaataagcac |
3173869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 3174027 - 3173955
Alignment:
| Q |
204 |
ttaaatttccaaagtt-catctttaatttttaaaaataaacccacttggtggggaaaaaattattgtaatttt |
275 |
Q |
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| T |
3174027 |
ttaaattttcaaagtttcatttttaattttcagaaataaacccacttggtggggcaaaaattattgtaatttt |
3173955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 32966275 - 32966182
Alignment:
| Q |
42 |
agttgttgtagtgacacaatgattgctgcaccagccatgaaacctaccaatgttgcctttgatagaaaatcaatcacaaagcctaacctgtata |
135 |
Q |
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| T |
32966275 |
agttgttgtagagacacaattatggcagctccagccataaacccaattaaggttgccttagatagaaaatcaatgataaatcctagcctgtata |
32966182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 44012884 - 44012991
Alignment:
| Q |
24 |
attcctagtaaccctttgagttgttgtagtgacacaatgattgctgcaccagccatgaaacctaccaatgttgcctttgatagaaaatcaatcacaaagc |
123 |
Q |
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||||| ||||||||||| | ||| || | |||||||||||| || ||||| ||||| ||||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
44012884 |
attccaagtaaccctttcaattgctgcaatgacacaatgatagcagcaccggccataaaaccgaccagggttgcttttgatagaaaatcaatcacaaagc |
44012983 |
T |
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| Q |
124 |
ctaacctg |
131 |
Q |
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||| |||| |
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| T |
44012984 |
ctagcctg |
44012991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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