View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_53 (Length: 217)
Name: NF21042_low_53
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 6489538 - 6489597
Alignment:
| Q |
140 |
tttttggtaaaagactcaagcactaataagccacacagaaaaaactgtggttgctggtgc |
199 |
Q |
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| T |
6489538 |
tttttggtaaaagactcaagcactaataagccacacagaaaaaactgtggttgctggtgc |
6489597 |
T |
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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 6489402 - 6489438
Alignment:
| Q |
12 |
tgaaaagaaaactaagcatggaacattgaaattggaa |
48 |
Q |
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| T |
6489402 |
tgaaaagaaaactaagcatggaacattgaaattggaa |
6489438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 6489443 - 6489476
Alignment:
| Q |
41 |
aattggaatttgattcatgaaattgatcaaagca |
74 |
Q |
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| T |
6489443 |
aattggaatttgattcatgaaattgatcaaagca |
6489476 |
T |
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