View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_6 (Length: 518)
Name: NF21042_low_6
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 49485269 - 49485573
Alignment:
| Q |
11 |
catcatcaaccaagtgatagaaggataagaagccagtttcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaat |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485269 |
catcaccaaccaagtgatagaaggataagaagccagtttcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaat |
49485368 |
T |
|
| Q |
111 |
tcttgagaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacc |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485369 |
tcttgagaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacc |
49485468 |
T |
|
| Q |
211 |
tagtgataagaaaatcattagttttaatcatgctgagaatgtttatgtcagaagcatctgagggaattttccctgctatcaattcaaacattattactcc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49485469 |
tagtgataagaaaatcattagttttaatcatgctgagaatgtttatgtcagaagcatctgagggaatttgccctgctatcaattcaaacattattactcc |
49485568 |
T |
|
| Q |
311 |
ttagt |
315 |
Q |
| |
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||||| |
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| T |
49485569 |
ttagt |
49485573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 322 - 504
Target Start/End: Original strand, 49485973 - 49486155
Alignment:
| Q |
322 |
caagaaagaaggaaaagaaaaatattttgcttctacaaatttgctcctatatccaatttactctatccctttccattcaatccttagtttctaaaattgt |
421 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
49485973 |
caagaaagaagaaaaagaaaaatattttgcttctacaaatttgctcctatgtccaatttactctatccctttccattcaatcctttgtttctaaaactgt |
49486072 |
T |
|
| Q |
422 |
acaagaaattcctattaaacaaataactctttcttcttcacatttagcagtaatgcagtatgcaagattatgatagccaaatg |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49486073 |
acaagaaattcctattaaacaaataactctttcttcttcacgtttagcagtaatgcagtatgcaagattatgatagccaaatg |
49486155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 49701785 - 49701992
Alignment:
| Q |
17 |
caaccaagtgatagaaggataagaagccagtttcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaattcttga |
116 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||| || ||| |||||||| |||||||||||| |
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| T |
49701785 |
caaccaagtaatagaaggataagaagccagtttcttcaagagaagaaagtccccttttac---ggatatggtatttatgaagataacgaaaaattcttga |
49701881 |
T |
|
| Q |
117 |
gaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtga |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || |||||||||| ||| ||||||||||| ||||||||||||||||| |||||||| ||| |
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| T |
49701882 |
gaggagcttggtcataattttgtgatttgaccatctttcaagtagttctctcaacaaaagttcatctttcttttctctcaaagatggcagaacctaatga |
49701981 |
T |
|
| Q |
217 |
taagaaaatca |
227 |
Q |
| |
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||||||||||| |
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| T |
49701982 |
taagaaaatca |
49701992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 49531972 - 49532185
Alignment:
| Q |
11 |
catcatcaaccaagtgatagaaggataagaagccagtttcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaat |
110 |
Q |
| |
|
||||| ||||||||| ||||||||| || |||||| ||||||||||||||||||||| | | ||| | ||| | |||||||||||||| ||||| |
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| T |
49531972 |
catcaccaaccaagtcatagaaggacaacaagccaatttcttcaagagaaggaagtcgctgtcttcct---ataaagtatctatcaagataatgaaaaaa |
49532068 |
T |
|
| Q |
111 |
tcttgagaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacc |
210 |
Q |
| |
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| ||||| |||||||||| |||||||| ||||||||||| |||||||||||||| ||| ||||||||||| ||| ||||||| ||||| |||||| |
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| T |
49532069 |
cttagagagacacttggtcatagttttgtgaattgaccatcttccgagcagttctctcaacaaaagttcatctttctttcctctcaacgatggcagaacc |
49532168 |
T |
|
| Q |
211 |
tagtgataagaaaatca |
227 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
49532169 |
tagtgataagaaaatca |
49532185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 49520984 - 49521206
Alignment:
| Q |
19 |
accaagtgatagaaggataagaagccagtttcttcaagagaaggaagtccccattttcttgggatatggaatctatcaagataacaaaaaattcttgaga |
118 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||| ||| || | ||||| ||| | |||||||||||||| |||| ||||||| |
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| T |
49520984 |
accaagttatagaaggataagaaagcagtttcttcaagagaattaagccctc---ttcttttgatgaagtatctatcaagataatgaaaacaccttgaga |
49521080 |
T |
|
| Q |
119 |
ggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacctagtgata |
218 |
Q |
| |
|
| | |||||||| |||| ||||||||||||||| || ||||||||||| ||| ||||||||||| ||| ||||||| ||||| ||||||||||||| |
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| T |
49521081 |
gacacctggtcatagttttctgatttgaccatctttggaccagttctctcaacaaaagttcatctttctttcctctcaatgatggcagaacctagtgatt |
49521180 |
T |
|
| Q |
219 |
agaaaatc--attagttttaatcatg |
242 |
Q |
| |
|
|||||||| |||||||||||||||| |
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| T |
49521181 |
agaaaatcatattagttttaatcatg |
49521206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 55071068 - 55070939
Alignment:
| Q |
94 |
tcaagataacaaaaaattcttgagaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctc |
193 |
Q |
| |
|
|||||||| ||||||| | |||||||| || ||||||||| | ||| || |||| ||||| | ||||||||||||| ||| || ||||| || ||||||| |
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| T |
55071068 |
tcaagataccaaaaaacttttgagaggcgcctggtcataactatgtaatctgactatcttctaagcagttctctcaacaaaaggtcatccttcttttctc |
55070969 |
T |
|
| Q |
194 |
tcaaagatggaagaacctagtgataagaaa |
223 |
Q |
| |
|
||||||||| |||||||| | |||||||| |
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|
| T |
55070968 |
ccaaagatggcagaacctattaataagaaa |
55070939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 55066740 - 55066629
Alignment:
| Q |
112 |
cttgagaggagcttggtcataattttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacct |
211 |
Q |
| |
|
||||||||| | |||||| ||||||||| ||||||||||||| ||| ||||||||||| ||| ||||||||| |||||| || ||||||||| |||| |
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|
| T |
55066740 |
cttgagaggcgtttggtcgtaattttgtaatttgaccatcttctgaacagttctctcaacaaaggttcatcttgcttttcttgcagagatggaag-acct |
55066642 |
T |
|
| Q |
212 |
agtgataagaaaa |
224 |
Q |
| |
|
| | ||||||||| |
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|
| T |
55066641 |
attaataagaaaa |
55066629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 50240198 - 50240273
Alignment:
| Q |
135 |
tttgtgatttgaccatcttatgagcagttctctcagcaagagttcatctttattttctctcaaagatggaagaacc |
210 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||| | ||||||||||||||| ||| ||| |||||||| |||||| |
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|
| T |
50240198 |
tttgtgatttggccatcttctgagcaattctcttaacaagagttcatctttctttcctcgtaaagatggcagaacc |
50240273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 55071141 - 55071093
Alignment:
| Q |
18 |
aaccaagtgatagaaggataagaagccagtttcttcaagagaaggaagt |
66 |
Q |
| |
|
||||| ||| || ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
55071141 |
aaccaggtggtaaaaggatatgaagccggtttcttcaagagaaggaagt |
55071093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 54150782 - 54150739
Alignment:
| Q |
17 |
caaccaagtgatagaaggataagaagccagtttcttcaagagaa |
60 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||| |
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|
| T |
54150782 |
caaccaagtcataaaaggataagaagccaatttcttcaagagaa |
54150739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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