View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21042_low_7 (Length: 515)

Name: NF21042_low_7
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21042_low_7
NF21042_low_7
[»] chr4 (35 HSPs)
chr4 (11-500)||(7908076-7908565)
chr4 (11-500)||(7877468-7877974)
chr4 (11-500)||(7773658-7774159)
chr4 (18-500)||(7789837-7790307)
chr4 (18-500)||(7771152-7771622)
chr4 (210-500)||(7237763-7238050)
chr4 (271-499)||(7800386-7800611)
chr4 (271-499)||(7822718-7822943)
chr4 (271-398)||(7813327-7813454)
chr4 (131-251)||(50669055-50669181)
chr4 (352-492)||(7904788-7904926)
chr4 (282-385)||(37827109-37827212)
chr4 (112-251)||(48852666-48852811)
chr4 (111-185)||(49048508-49048582)
chr4 (25-90)||(7800783-7800848)
chr4 (16-91)||(7237575-7237650)
chr4 (293-493)||(7765376-7765573)
chr4 (293-493)||(7786198-7786395)
chr4 (111-178)||(45372004-45372071)
chr4 (201-326)||(48705390-48705518)
chr4 (198-251)||(48147745-48147798)
chr4 (111-177)||(49044122-49044188)
chr4 (207-251)||(37827022-37827066)
chr4 (110-174)||(48891495-48891559)
chr4 (200-251)||(48170592-48170643)
chr4 (11-77)||(7786626-7786692)
chr4 (193-251)||(50250804-50250862)
chr4 (113-178)||(7765703-7765768)
chr4 (109-178)||(7786525-7786594)
chr4 (210-251)||(7813477-7813518)
chr4 (210-251)||(7822966-7823007)
chr4 (198-251)||(48898704-48898757)
chr4 (352-388)||(45372254-45372290)
chr4 (207-251)||(48735419-48735463)
chr4 (211-251)||(48902932-48902972)
[»] chr5 (2 HSPs)
chr5 (111-176)||(179112-179177)
chr5 (198-251)||(29696206-29696259)
[»] chr3 (7 HSPs)
chr3 (271-388)||(47452011-47452128)
chr3 (198-251)||(11005981-11006034)
chr3 (198-251)||(11024556-11024609)
chr3 (195-251)||(11015541-11015597)
chr3 (129-178)||(11015457-11015506)
chr3 (129-184)||(11005894-11005949)
chr3 (129-184)||(11024469-11024524)
[»] chr8 (3 HSPs)
chr8 (201-251)||(12200307-12200357)
chr8 (201-251)||(12444735-12444785)
chr8 (111-184)||(4031836-4031909)
[»] chr7 (2 HSPs)
chr7 (198-251)||(48883801-48883854)
chr7 (272-337)||(48883703-48883768)
[»] chr6 (4 HSPs)
chr6 (269-334)||(21979752-21979817)
chr6 (282-376)||(21015672-21015766)
chr6 (210-251)||(21979678-21979719)
chr6 (112-169)||(21015897-21015954)
[»] chr1 (4 HSPs)
chr1 (198-251)||(24367147-24367200)
chr1 (209-251)||(24310171-24310213)
chr1 (209-250)||(24322463-24322504)
chr1 (198-251)||(24369480-24369533)


Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Complemental strand, 7908565 - 7908076
Alignment:
Q  11 caaaggcaacaatgacattcaaatctaaatcacgacgtaaagccaaccaatgaataacaccattaaatagcaacccttttctgcaagaagagaggacacc 110  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  7908565 caaaggcaacaatgacagtcaaacctaaatcacgacgtaaagccaaccaatgaataacaccattaaatagcaatccttctctgcaagaagagaggacacc 7908466  T
Q  111 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatacggctggattataggacaatgaa 210  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  7908465 ataagggaagtaattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatgcggatggattataggacaatgaa 7908366  T
Q  211 accaccaagtaatcatctcttgactggtcatatccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggggtatttgttttttaaatc 310  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  7908365 accaccaagtaatcatctcttgactggtcataaccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggtgtatatgttttttaaatc 7908266  T
Q  311 cagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaag 410  Q
    |||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7908265 cagtagatggattccatatgtagatgtctggaggacggtacaaaagtataaaccctctacatgaacctctaatttcaaccggaaaatgagatcgggtaag 7908166  T
Q  411 ccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatat 500  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908165 cgaaaaagtaatgttgagtgaagcaggatcatcatcgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatat 7908076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 500
Target Start/End: Complemental strand, 7877974 - 7877468
Alignment:
Q  11 caaaggcaacaatgacattcaaatctaaatcacgacgtaaagccaaccaatgaataacaccattaaatagcaacccttttctgcaagaagagaggacacc 110  Q
    |||||| || ||||||| || || |||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||| || |||| |    
T  7877974 caaaggtaagaatgacaatccaacctaaattacgacgcaaagccaaccaatgaacaaccccattaaatagcaacccttttctgcgagaagggatgacagc 7877875  T
Q  111 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaa-----tacggctggattataggaca 205  Q
    |||||||||| || ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||     || || ||||||||||||||    
T  7877874 ataagggaagggagtactctcagtttctttccatgtattatctctaaatgagaaaaacttcaaatgtgttgaaaattaactatggttggattataggaca 7877775  T
Q  206 atgaaaccaccaagtaatcatctcttgactggtcatatccaaaaccct------------gacattgtgctactgatttggaatcaacaggagacagggg 293  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| |            |||| | |||| || ||||||||  || ||||||||  ||    
T  7877774 atgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccatgtatatcaatgcgacaatatgctgctaatttggaacgaaaaggagacacagg 7877675  T
Q  294 tatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccgga 393  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||| |||| ||  ||||||||||||||||| ||||||||||||||||||||||||    
T  7877674 tatttgttttttaaatccagtggatggattccatatgtagatgattggatgacagtacaaaagtataaaccctctgcatgaacctctaatttcaaccgga 7877575  T
Q  394 aaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagag 493  Q
    ||||||| ||    |||  ||||| ||||||| |||||||||||||||||| ||||||||||||||| |||| |||| |||||| |||||||||||||||    
T  7877574 aaataaggtccacgaagtgaaaaattaatgttcagtgaagcaggatcatcatcgttaagaaatgcttcaaaacctattgatcgaatttcatgagatagag 7877475  T
Q  494 ttgatat 500  Q
     ||||||    
T  7877474 gtgatat 7877468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 500
Target Start/End: Original strand, 7773658 - 7774159
Alignment:
Q  11 caaaggcaacaatgacattcaaatctaaatcacgacgtaaagccaaccaatgaataacaccattaaatagcaacccttttctgcaagaagagaggacacc 110  Q
    |||||| |||||| |||||| ||  |||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||| ||||| || |||||     
T  7773658 caaaggaaacaattacattccaacgtaaatcacgacgcaaagccaaccaatgaatagccccattaaatagaaacccttttctgcgagaagggatgacaca 7773757  T
Q  111 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatacggctggattataggacaatgaa 210  Q
    |||||  ||| ||  ||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |  || ||||||||||  |    
T  7773758 ataagcaaagggagcaccctcagtttctttccatgtattatctctaaatgagaaaaacttcaaacgtgttgaaactacggttatatgataggacaataca 7773857  T
Q  211 accaccaagtaatcatctcttgactggtcatatccaaaaccctg------------acattgtgctactgatttggaatcaacaggagacaggggtattt 298  Q
    |||||||||||||||||||||  ||||||||| |||||||| ||            |||  ||  | || ||||||||  || |||||||   |||||||    
T  7773858 accaccaagtaatcatctcttacctggtcataaccaaaaccatgtatatgaatgctacaaagttttgctaatttggaacgaaaaggagacccaggtattt 7773957  T
Q  299 gttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaata 398  Q
    |||||||||||||||| |||||||||||||||||||||| ||| | ||| |  |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  7773958 gttttttaaatccagtggatggattccatatgtagatgtttgggtcacgatacaaaagtataaaccctctacacgaacctctaatttcagccggaaaata 7774057  T
Q  399 agatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgat 498  Q
    ||||   | |||| ||||| ||| ||| | |||||||| ||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||    
T  7774058 agattctggaagcgaaaaattaaggttcactgaagcagtatcatcatcgttaagaaatgcttcaaaacctatagatcgaatttcatgagatagagatgat 7774157  T
Q  499 at 500  Q
    ||    
T  7774158 at 7774159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 7790307 - 7789837
Alignment:
Q  18 aacaatgacattcaaatctaaatcacgacgtaaagccaaccaatgaataacaccattaaatagcaacccttttctgcaagaagagaggacaccataaggg 117  Q
    ||||||||||||||  | ||||||||| ||  ||||||||||||||||| | ||||||||||| |||||||||||   |||||  | |||| ||||||||    
T  7790307 aacaatgacattcagttttaaatcacggcgataagccaaccaatgaatagccccattaaatagaaacccttttctctgagaaggaacgacaacataaggg 7790208  T
Q  118 aagtga---ttaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatacggctggattataggacaatgaaacca 214  Q
    ||||||   ||||| |||||||||||||| ||||||||||||| |||||||| || |||||||| |||||             || ||| |||  |||||    
T  7790207 aagtgagtattaccatcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatgaaac------------atgggaaaattcaacca 7790120  T
Q  215 ccaagtaatcatctcttgactggtcatatccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggggtatttgttttttaaatccagt 314  Q
    |||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||  |||||||  ||||||||| |||||||||||||    
T  7790119 ccaagtaatcatctcttgactggtcataaccaaaaccatgacaatgtgctattgatttggaatcaaagggagacaccggtatttgtgttttaaatccagt 7790020  T
Q  315 agatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaa 414  Q
     ||||||||||||| || ||||| |||  | ||||  |||||||||||||||||||| ||||||||||||| ||| ||||||||||||   | |||| ||    
T  7790019 ggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttaaacaggaaaataagattctggaagcgaa 7789920  T
Q  415 aaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatat 500  Q
    ||| ||| ||| | ||||||||||||||   ||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||    
T  7789919 aaattaaggttcactgaagcaggatcat---cgttaagaaatgcttcaaaatctatagatcaaatttcatgagattgagttgatat 7789837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 7771622 - 7771152
Alignment:
Q  18 aacaatgacattcaaatctaaatcacgacgtaaagccaaccaatgaataacaccattaaatagcaacccttttctgcaagaagagaggacaccataaggg 117  Q
    ||||||||||||||  | ||||||||| ||  ||||||||||||||||| | ||||||||||| |||||||||||   |||||  | |||  ||||||||    
T  7771622 aacaatgacattcagttttaaatcacggcgataagccaaccaatgaatagccccattaaatagaaacccttttctctgagaaggaacgacgacataaggg 7771523  T
Q  118 aagtgatta---ccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaatacggctggattataggacaatgaaacca 214  Q
    |||||| ||   || |||||||||||||| ||||||||||||| |||||||| || |||||||| |||||             || ||| |||  |||||    
T  7771522 aagtgagtatgaccatcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatgaaac------------atgggaaaattcaacca 7771435  T
Q  215 ccaagtaatcatctcttgactggtcatatccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggggtatttgttttttaaatccagt 314  Q
    |||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||  |||||||  ||||||||| ||||||||||| |    
T  7771434 ccaagtaatcatctcttgactggtcataaccaaaaccatgacaatgtgctattgatttggaatcaaagggagacaccggtatttgtgttttaaatccaat 7771335  T
Q  315 agatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagccaa 414  Q
     ||||||||||||| || ||||| |||  | ||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||   | |||| ||    
T  7771334 ggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttcaacaggaaaataagattctggaagcgaa 7771235  T
Q  415 aaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatat 500  Q
    ||| ||| ||| | ||||||||||||||   ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  7771234 aaattaaggttcactgaagcaggatcat---cgttaagaaatgcttcaaaatctatagatcgaatttcatgagattgagttgatat 7771152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 210 - 500
Target Start/End: Original strand, 7237763 - 7238050
Alignment:
Q  210 aaccaccaagtaatcatctcttgactggtcatatccaaaaccctgacattgtgctactgatttggaatcaacaggagacaggggtatttgttttttaaat 309  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||   ||||| | |||||||||||| |||||||| |||||||||||||||||||    
T  7237763 aaccaccaagtaatcatctcttgactggtcataaccaaaaccatgacaacttgctaataatttggaatcaaaaggagacacgggtatttgttttttaaat 7237862  T
Q  310 ccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaa 409  Q
    ||||| ||||||||||||| |||||||| |||  |  |||  ||||||||||||||||||||||||||||| |||||||| ||||||||||||   | ||    
T  7237863 ccagtggatggattccatacgtagatgtttggaggttggtacaaaagtataaaccctctacatgaacctctgatttcaacaggaaaataagattccgaaa 7237962  T
Q  410 gccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatat 500  Q
     | ||||| ||  |||  ||||| |||||||||   ||||||||||||||| |  ||| || |||||| |||||||||||| || ||||||    
T  7237963 acaaaaaattacggttctgtgaaccaggatcat---cgttaagaaatgcttcaggatcgattgatcgaatttcatgagataaaggtgatat 7238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 271 - 499
Target Start/End: Complemental strand, 7800611 - 7800386
Alignment:
Q  271 ttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctac 370  Q
    |||||||||| || ||||| |||||||||||| ||||||||||||||||||||||| | ||| ||||||||   ||||| ||||| || |||||||| ||    
T  7800611 ttggaatcaaaagaagacacgggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccac 7800512  T
Q  371 atgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctat 470  Q
    |||| ||| |||||||||  ||||||||||||   | |||| | ||| ||| |||  |||||| | ||||||||   |||||  |||| | || ||||||    
T  7800511 atgaccctataatttcaaaaggaaaataagatttaggaagcaagaaattaaggttcggtgaaggaagatcatca---ttaagccatgcatcaacatctat 7800415  T
Q  471 agatcgagtttcatgagatagagttgata 499  Q
    ||||||| |||||||||||| || |||||    
T  7800414 agatcgaatttcatgagataaagatgata 7800386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 271 - 499
Target Start/End: Complemental strand, 7822943 - 7822718
Alignment:
Q  271 ttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctac 370  Q
    |||||||||| || |||||  ||||||||||| ||||||||||||||||||||||||| ||| ||||||||   ||||| ||||| || |||||||| ||    
T  7822943 ttggaatcaaaagaagacactggtatttgtttcttaaatccagtagatggattccataggtaaatgtctggaaaacggtataaaaataaaaaccctccac 7822844  T
Q  371 atgaacctctaatttcaaccggaaaataagatcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctat 470  Q
    |||| ||| |||||||||  ||||||||||||   | |||| | ||| ||| |||  |||||| | ||||||||   |||||  |||| | || ||||||    
T  7822843 atgaccctataatttcaaaaggaaaataagatttaggaagcaagaaattaaggttcggtgaaggaagatcatca---ttaagccatgcatcaacatctat 7822747  T
Q  471 agatcgagtttcatgagatagagttgata 499  Q
    ||||||| |||||||||||| || |||||    
T  7822746 agatcgaatttcatgagataaagatgata 7822718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 7813454 - 7813327
Alignment:
Q  271 ttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctac 370  Q
    |||||||||| || ||||| |||||||||||| ||||||||||||||||||||||| | ||| ||||||||   ||||| ||||| || |||||||| ||    
T  7813454 ttggaatcaaaagaagacacgggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccac 7813355  T
Q  371 atgaacctctaatttcaaccggaaaata 398  Q
    |||| ||| |||||||||  ||||||||    
T  7813354 atgaccctataatttcaaaaggaaaata 7813327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 131 - 251
Target Start/End: Complemental strand, 50669181 - 50669055
Alignment:
Q  131 caatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa----atac--ggctggattataggacaatgaaaccaccaagtaatc 224  Q
    |||||| |||||||||||||||||| |||||||||||||  |||| || |||||    || |  || ||||| ||||||||||||||| |||||||||||    
T  50669181 caatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaatc 50669082  T
Q  225 atctcttgactggtcatatccaaaacc 251  Q
    |||||||||| ||||||| ||||||||    
T  50669081 atctcttgaccggtcataaccaaaacc 50669055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 492
Target Start/End: Complemental strand, 7904926 - 7904788
Alignment:
Q  352 aaaagtataaaccctctacatgaacctctaatttcaaccggaaaataagatcgggtaagc-caaaaagtaatgttgagtgaagcaggatcatcaccgtta 450  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||  || ||||  ||||| ||| |||   |||| || ||| ||||   |||    
T  7904926 aaaagtataaaccctctacacgaacctctaatttcaactggaaaataagattcgggaagcgaaaaaattaaggttccatgaaccacgatgatca---tta 7904830  T
Q  451 agaaatgctttaaaatctatagatcgagtttcatgagataga 492  Q
    |||||||||| ||||| || |||| || ||||||||||||||    
T  7904829 agaaatgcttcaaaatataaagattgaatttcatgagataga 7904788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 282 - 385
Target Start/End: Original strand, 37827109 - 37827212
Alignment:
Q  282 aggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctcta 381  Q
    |||||||| |||||||||||| | ||||||||| |||||||||||||||||||||| |     |||||| |||| || ||||||||||| ||||||| ||    
T  37827109 aggagacaagggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaaccttta 37827208  T
Q  382 attt 385  Q
    ||||    
T  37827209 attt 37827212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 48852811 - 48852666
Alignment:
Q  112 taagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa------atacggctggattataggaca 205  Q
    |||||||||||| ||||||||||||||||||||| |||| |||| | |||||||||||  ||||||| |||||       || || || || ||||||||    
T  48852811 taagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatcataggaca 48852712  T
Q  206 atgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
     | |||| ||||||||||||||  ||||| ||||||| ||||||||    
T  48852711 ttaaaactaccaagtaatcatcggttgacgggtcatacccaaaacc 48852666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 49048508 - 49048582
Alignment:
Q  111 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaaa 185  Q
    |||||||| |||| |||||||||||||||||||| |||||||||| |  |||||||||| |||||||| ||||||    
T  49048508 ataagggatgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgatgaaaa 49048582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 7800848 - 7800783
Alignment:
Q  25 acattcaaatctaaatcacgacgtaaagccaaccaatgaataacaccattaaatagcaaccctttt 90  Q
    ||||||||||||||||||||||   |||||| |||||||||| | |||||||||||||||||||||    
T  7800848 acattcaaatctaaatcacgactccaagccagccaatgaatagccccattaaatagcaaccctttt 7800783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 7237575 - 7237650
Alignment:
Q  16 gcaacaatgacattcaaatctaaatcacgacgtaaagccaaccaatgaataacaccattaaatagcaacccttttc 91  Q
    ||||| ||||||| ||||||||||||||| ||  |||| | |||||||||||| ||||||||||| ||||||||||    
T  7237575 gcaactatgacatccaaatctaaatcacggcgataagcaagccaatgaataaccccattaaatagaaacccttttc 7237650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 493
Target Start/End: Complemental strand, 7765573 - 7765376
Alignment:
Q  293 gtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccgg 392  Q
    |||||||| ||||  |||| || ||||||||||| ||||| |||| ||| |||||||  | || |||||| ||||||||||| ||| |||||||||  ||    
T  7765573 gtatttgtcttttcgatccggtggatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttaatttcaaaggg 7765474  T
Q  393 aaaataaga-tcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatag 491  Q
    ||||||||| || || |||  || |  ||| |||| ||||||||||| |||   ||||||||||||| | |||||| || |||||| ||||| |||||||    
T  7765473 aaaataagagtctgg-aagggaacagttaaagttgggtgaagcaggagcat---cgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatag 7765378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 493
Target Start/End: Complemental strand, 7786395 - 7786198
Alignment:
Q  293 gtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaacctctaatttcaaccgg 392  Q
    |||||||| ||||  |||| || ||||||||||||||||| |||| ||| ||||| |  | || |||||| ||||||||||| ||| |||||||||  ||    
T  7786395 gtatttgtcttttcgatccggtggatggattccatatgtaaatgtttggatgacgatacataaatataaaacctctacatgaccctttaatttcaaaggg 7786296  T
Q  393 aaaataaga-tcgggtaagccaaaaagtaatgttgagtgaagcaggatcatcaccgttaagaaatgctttaaaatctatagatcgagtttcatgagatag 491  Q
    ||||||||| || || |||  || |  ||| |||| ||||||||||| |||   ||||||||||||| | |||||| || |||||| ||||| |||||||    
T  7786295 aaaataagagtctgg-aagggaacagttaaagttgggtgaagcaggagcat---cgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatag 7786200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 45372004 - 45372071
Alignment:
Q  111 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 178  Q
    ||||||||||||| ||||||||| |||| |||| ||||||||||| | ||||||||||| ||||||||    
T  45372004 ataagggaagtgagtaccctcaagttctctccaagtattatctctcaatgagaaaaactccaaatgtg 45372071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 48705390 - 48705518
Alignment:
Q  201 ggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaaccctg---acattgtgctactgatttggaatcaacaggagacaggggtatt 297  Q
    ||||| |||||| ||||||||||||||| ||||||| |||||||||||||| ||   | ||| |||  || | | |||| ||| ||| ||||  ||||||    
T  48705390 ggacattgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccatggaaatattctgcatctaaatcggaaccaaaaggtgacaaaggtatt 48705489  T
Q  298 tgttttttaaatccagtagatggattcca 326  Q
    ||||| | |||||||||||||||||||||    
T  48705490 tgtttgtgaaatccagtagatggattcca 48705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 48147745 - 48147798
Alignment:
Q  198 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||| |||||||||||||||||||||||| || |||||||||| ||||||||    
T  48147745 ataggagaatgaaaccaccaagtaatcatctgttaactggtcatacccaaaacc 48147798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 49044122 - 49044188
Alignment:
Q  111 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgt 177  Q
    ||||||||||| | || |||||||||| |||||| |||||||||| | ||||||||||| |||||||    
T  49044122 ataagggaagttagtaacctcaatttcattccatctattatctctcaatgagaaaaactccaaatgt 49044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 37827022 - 37827066
Alignment:
Q  207 tgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||    
T  37827022 tgaaacaaccaagtaatcatctctagactggtcataaccaaaacc 37827066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 48891559 - 48891495
Alignment:
Q  110 cataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaa 174  Q
    |||||||||| | | |||||||||||||||||||  |||||||||| | ||||||||||| ||||    
T  48891559 cataagggaaataagtaccctcaatttctttccacatattatctctcaatgagaaaaactccaaa 48891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 48170592 - 48170643
Alignment:
Q  200 aggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||| ||||||||| ||||||||||||||| |||| ||||| ||||||||    
T  48170592 aggacactgaaaccactaagtaatcatctcttaactgatcatacccaaaacc 48170643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 7786692 - 7786626
Alignment:
Q  11 caaaggcaacaatgacattcaaatctaaatcacgacgtaaagccaaccaatgaataacaccattaaa 77  Q
    ||||| |||||||||||| |||| ||| |||||||||  ||| ||||||||||||| | ||||||||    
T  7786692 caaagccaacaatgacatccaaagctatatcacgacgcgaagacaaccaatgaatagccccattaaa 7786626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 50250804 - 50250862
Alignment:
Q  193 ggattataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||| |||||| | |||||||||||| ||||||||| |||| |||||||| ||||||||    
T  50250804 ggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaacc 50250862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 7765768 - 7765703
Alignment:
Q  113 aagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 178  Q
    |||| |||||| ||||||| ||||||||||| ||||| ||| |||  |||||||||| ||||||||    
T  7765768 aaggtaagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtg 7765703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 7786594 - 7786525
Alignment:
Q  109 ccataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 178  Q
    |||||||| |||||| ||||||| ||||||||||| ||||| ||| |||  ||||||| || ||||||||    
T  7786594 ccataaggtaagtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaacctccaaatgtg 7786525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 7813518 - 7813477
Alignment:
Q  210 aaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    ||||| || |||||||||||||||||||||||| ||||||||    
T  7813518 aaccagcacgtaatcatctcttgactggtcataaccaaaacc 7813477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 7823007 - 7822966
Alignment:
Q  210 aaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    ||||| || |||||||||||||||||||||||| ||||||||    
T  7823007 aaccagcacgtaatcatctcttgactggtcataaccaaaacc 7822966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 48898757 - 48898704
Alignment:
Q  198 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||||||| ||||||| |||||||||||| || |||| ||||| ||||||||    
T  48898757 ataggacaataaaaccactaagtaatcatctgttaactgatcatacccaaaacc 48898704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 45372254 - 45372290
Alignment:
Q  352 aaaagtataaaccctctacatgaacctctaatttcaa 388  Q
    |||| |||||||||||||||||||||| |||||||||    
T  45372254 aaaaatataaaccctctacatgaacctttaatttcaa 45372290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 48735419 - 48735463
Alignment:
Q  207 tgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||||||||||||||||||| || | |||||||| ||||||||    
T  48735419 tgaaaccaccaagtaatcatctgttaaatggtcatacccaaaacc 48735463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 48902972 - 48902932
Alignment:
Q  211 accaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||| |||||||||||||||||| |||||||| ||||||||    
T  48902972 accatcaagtaatcatctcttgagtggtcatacccaaaacc 48902932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 179177 - 179112
Alignment:
Q  111 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatg 176  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||| || ||||||    
T  179177 ataagggcagtgaataccctcaatttctttccatgtattatctctcaatgagaaaatctccaaatg 179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 29696259 - 29696206
Alignment:
Q  198 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||||| ||||| |||||||||||||||| |||||| |||||| ||||||||    
T  29696259 ataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaacc 29696206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 47452011 - 47452128
Alignment:
Q  271 ttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctac 370  Q
    |||||| ||| ||||| ||  ||||||||||| | || |||||| |||||||||||||||||||||| ||    ||    ||||||||||||||||||||    
T  47452011 ttggaaccaaaaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctac 47452110  T
Q  371 atgaacctctaatttcaa 388  Q
    |||||||| |||||||||    
T  47452111 atgaacctttaatttcaa 47452128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 11005981 - 11006034
Alignment:
Q  198 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||    
T  11005981 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaacc 11006034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 11024556 - 11024609
Alignment:
Q  198 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||    
T  11024556 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaacc 11024609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 11015541 - 11015597
Alignment:
Q  195 attataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    ||||||||||| ||| ||||||||||||||||||||| | |||||||| ||||||||    
T  11015541 attataggacactgataccaccaagtaatcatctcttaaatggtcatacccaaaacc 11015597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 11015457 - 11015506
Alignment:
Q  129 ctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 178  Q
    ||||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  11015457 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtg 11015506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 11005894 - 11005949
Alignment:
Q  129 ctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa 184  Q
    |||||||||||||||||||||  |||| | |||||||||||||||| ||| |||||    
T  11005894 ctcaatttctttccatgtattcgctctcaatgagaaaaacttcaaacgtgatgaaa 11005949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 11024469 - 11024524
Alignment:
Q  129 ctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa 184  Q
    ||||||||| |||||||||||| |||| |  ||||||||||||||||||| |||||    
T  11024469 ctcaatttcgttccatgtattagctctcaaagagaaaaacttcaaatgtgatgaaa 11024524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 12200357 - 12200307
Alignment:
Q  201 ggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||    
T  12200357 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaacc 12200307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 12444785 - 12444735
Alignment:
Q  201 ggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||    
T  12444785 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaacc 12444735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 4031836 - 4031909
Alignment:
Q  111 ataagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa 184  Q
    ||||||||| ||  ||||||| |||||||||||||| ||  |||| | ||||||||||| |||||||| |||||    
T  4031836 ataagggaaatggataccctcgatttctttccatgtgttggctctcagtgagaaaaactccaaatgtgatgaaa 4031909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 48883854 - 48883801
Alignment:
Q  198 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||    
T  48883854 ataggacattgaaaccaccatgtaatcatctcttgacgggtcataaccaaaacc 48883801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 48883768 - 48883703
Alignment:
Q  272 tggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgt 337  Q
    |||||| || ||||||||  ||||||||||| | |||||||||  |||||||||||||| ||||||    
T  48883768 tggaataaaaaggagacaaaggtatttgtttgtgaaatccagtgtatggattccatatgcagatgt 48883703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 21979752 - 21979817
Alignment:
Q  269 atttggaatcaacaggagacaggggtatttgttttttaaatccagtagatggattccatatgtaga 334  Q
    |||||||||||| ||||||||  ||||||||||||| || ||||||||| || |||||||||||||    
T  21979752 atttggaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtaga 21979817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 21015766 - 21015672
Alignment:
Q  282 aggagacaggggtatttgttttttaaatccagtagatggattccatatgtagatgtctggttgacggtgtaaaagtataaaccctctacatgaac 376  Q
    ||||||||  ||||||||||| | || || ||| ||||||||||||| |||||||| ||  | | |||| |||| ||||||||||||||||||||    
T  21015766 aggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 21979678 - 21979719
Alignment:
Q  210 aaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaacc 21979719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 21015954 - 21015897
Alignment:
Q  112 taagggaagtgattaccctcaatttctttccatgtattatctctaactgagaaaaact 169  Q
    ||||||||| || |||||||||||||||||||  |||||||||| |  ||||||||||    
T  21015954 taagggaagggagtaccctcaatttctttccacctattatctctcaacgagaaaaact 21015897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 24367200 - 24367147
Alignment:
Q  198 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||| || ||||||||||||||||||||| |||||| |||||| ||||||||    
T  24367200 ataggataacgaaaccaccaagtaatcatctgttgacttgtcatacccaaaacc 24367147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 24310213 - 24310171
Alignment:
Q  209 aaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||| |||||||||||||||||||||| |||||| ||||||||    
T  24310213 aaactaccaagtaatcatctcttgactcgtcataaccaaaacc 24310171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 24322504 - 24322463
Alignment:
Q  209 aaaccaccaagtaatcatctcttgactggtcatatccaaaac 250  Q
    |||| ||||||||||| |||||||||| ||||||||||||||    
T  24322504 aaactaccaagtaatcctctcttgactcgtcatatccaaaac 24322463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 24369533 - 24369480
Alignment:
Q  198 ataggacaatgaaaccaccaagtaatcatctcttgactggtcatatccaaaacc 251  Q
    |||||| | ||||||||||| |||||||||| |||||| |||||| ||||||||    
T  24369533 ataggatactgaaaccaccaggtaatcatctgttgactcgtcatagccaaaacc 24369480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University