View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21042_low_8 (Length: 496)

Name: NF21042_low_8
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21042_low_8
NF21042_low_8
[»] chr6 (2 HSPs)
chr6 (1-480)||(34024387-34024866)
chr6 (284-351)||(34020422-34020489)
[»] chr4 (4 HSPs)
chr4 (195-319)||(55633899-55634023)
chr4 (312-427)||(51790841-51790956)
chr4 (356-428)||(55633828-55633900)
chr4 (8-58)||(55634039-55634089)
[»] chr3 (3 HSPs)
chr3 (195-319)||(16436869-16436993)
chr3 (356-428)||(16436798-16436870)
chr3 (8-58)||(16437009-16437059)
[»] chr1 (3 HSPs)
chr1 (195-319)||(27890913-27891037)
chr1 (356-428)||(27890842-27890914)
chr1 (8-58)||(27891053-27891103)
[»] chr2 (3 HSPs)
chr2 (312-427)||(10902301-10902416)
chr2 (14-83)||(10902169-10902238)
chr2 (200-235)||(10902267-10902302)


Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 34024866 - 34024387
Alignment:
Q  1 gcatcagaatctcgcaaagatcgcaaatcatcctctggaatgagcggttcaccgaagaaaggaggtcacggagggaagttcacatggatcggatctgatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34024866 gcatcagaatctcgcaaagatcgcaaatcatcctctggaatgagcggttcaccgaagaaaggaggtcacggagggaagttcacatggatcggatctgatc 34024767  T
Q  101 accttcagatcggtgctgaaaacggagctgctttggattctaaggatccgaattttgaagatcatgaagaaatcatcgtcgccgacactgacaccgtcgc 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34024766 accttcagatcggtgctgaaaacgaagctgctttggattctaaggatccgaattttgaagatcatgaagaaatcatcgtcgccgacactgacaccgtcgc 34024667  T
Q  201 cgccgctgttaccgtttgattgcggtggttgtgtttcattactggttatgtaaatagagtaatttgaattgaataatgtgaattgtgaaagtgagattat 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34024666 cgccgctgttaccgtttgattgcggtggttgtgtttcgttactggttatgtaaatagagtaatttgaattgaataatgtgaattgtgaaagtgagattat 34024567  T
Q  301 gaagaaatgttttggagtttggttaatctagatttagaattatgtttatgtcattttctatatagttttgtaaattaatcagtgatattaaactagttta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34024566 gaagaaatgttttggagtttggttaatctagatttagaattatgtttatgtcattttctatatagttttgtaaattaatcagtgatattaaactagttta 34024467  T
Q  401 aagttttcatgactatttaaatttgttttgagaagtaatttgcatgtaaatttgttgagatttagttgtatactctgtcg 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34024466 aagttttcatgactatttaaatttgttttgagaagtaatttgcatgtaaatttgttgagaattagttgtatactctgtcg 34024387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 34020489 - 34020422
Alignment:
Q  284 tgtgaaagtgagattatgaagaaatgttttggagtttggttaatctagatttagaattatgtttatgt 351  Q
    ||||||| |||||||||||||||| || ||| |||||| |||||||||||||||| ||||||||||||    
T  34020489 tgtgaaaatgagattatgaagaaacgtgttgcagtttgcttaatctagatttagatttatgtttatgt 34020422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 55634023 - 55633899
Alignment:
Q  195 cgtcgccgccgctgttaccgtttgattgcggtggttgtgtttcattactggttatgtaaatagagtaatttgaattgaataatgtgaattgtgaaagtga 294  Q
    |||| |||||||||||||  | |||||||||||||| ||||   ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55634023 cgtcaccgccgctgttacaatgtgattgcggtggttatgttctgttaccagttatttaaatagagtaatttgaattgaataatgtgaattgtgaaagtga 55633924  T
Q  295 gattatgaagaaatgttttggagtt 319  Q
    |||||||||||||||| ||||||||    
T  55633923 gattatgaagaaatgtgttggagtt 55633899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 312 - 427
Target Start/End: Complemental strand, 51790956 - 51790841
Alignment:
Q  312 ttggagtttggttaatctagatttagaattatgtttatgtcattttctatatagttttgtaaattaatcagtgatattaaactagtttaaagttttcatg 411  Q
    |||||||||| |||||||||||||||| |||||||||| | ||||| ||||| |||||||||||||||||||||||| ||| ||||||||| ||| ||||    
T  51790956 ttggagtttgcttaatctagatttagatttatgtttatatgattttgtatatggttttgtaaattaatcagtgatataaaagtagtttaaaatttgcatg 51790857  T
Q  412 actatttaaatttgtt 427  Q
    |||||| |||||||||    
T  51790856 actattcaaatttgtt 51790841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 55633900 - 55633828
Alignment:
Q  356 ttctatatagttttgtaaattaatcagtgatattaaactagtttaaagttttcatgactatttaaatttgttt 428  Q
    |||||||| |||||||||||||||| ||||||| ||| |||||||||||||  |||| |||| ||||||||||    
T  55633900 ttctatatggttttgtaaattaatcggtgatataaaagtagtttaaagtttgtatgattattcaaatttgttt 55633828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 55634089 - 55634039
Alignment:
Q  8 aatctcgcaaagatcgcaaatcatcctctggaatgagcggttcaccgaaga 58  Q
    |||||||| | ||||||||| ||||||||||||||||||||||| ||||||    
T  55634089 aatctcgccaggatcgcaaaacatcctctggaatgagcggttcatcgaaga 55634039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 16436993 - 16436869
Alignment:
Q  195 cgtcgccgccgctgttaccgtttgattgcggtggttgtgtttcattactggttatgtaaatagagtaatttgaattgaataatgtgaattgtgaaagtga 294  Q
    |||| |||||||||||||  | |||||||||||||| ||||   ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16436993 cgtcaccgccgctgttacaatgtgattgcggtggttatgttctgttaccagttatttaaatagagtaatttgaattgaataatgtgaattgtgaaagtga 16436894  T
Q  295 gattatgaagaaatgttttggagtt 319  Q
    |||||||||||||||| ||||||||    
T  16436893 gattatgaagaaatgtgttggagtt 16436869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 16436870 - 16436798
Alignment:
Q  356 ttctatatagttttgtaaattaatcagtgatattaaactagtttaaagttttcatgactatttaaatttgttt 428  Q
    |||||||| |||||||||||||||| ||||||| ||| |||||||||||||  |||| |||| ||||||||||    
T  16436870 ttctatatggttttgtaaattaatcggtgatataaaagtagtttaaagtttgtatgattattcaaatttgttt 16436798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 16437059 - 16437009
Alignment:
Q  8 aatctcgcaaagatcgcaaatcatcctctggaatgagcggttcaccgaaga 58  Q
    |||||||| | ||||||||| ||||||||||||||||||||||| ||||||    
T  16437059 aatctcgccaggatcgcaaaacatcctctggaatgagcggttcatcgaaga 16437009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 27891037 - 27890913
Alignment:
Q  195 cgtcgccgccgctgttaccgtttgattgcggtggttgtgtttcattactggttatgtaaatagagtaatttgaattgaataatgtgaattgtgaaagtga 294  Q
    |||| |||||||||||||  | |||||||||||||| ||||   ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27891037 cgtcaccgccgctgttacaatgtgattgcggtggttatgttctgttaccagttatttaaatagagtaatttgaattgaataatgtgaattgtgaaagtga 27890938  T
Q  295 gattatgaagaaatgttttggagtt 319  Q
    |||||||||||||||| ||||||||    
T  27890937 gattatgaagaaatgtgttggagtt 27890913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 27890914 - 27890842
Alignment:
Q  356 ttctatatagttttgtaaattaatcagtgatattaaactagtttaaagttttcatgactatttaaatttgttt 428  Q
    |||||||| |||||||||||||||| ||||||| ||| |||||||||||||  |||| |||| ||||||||||    
T  27890914 ttctatatggttttgtaaattaatcggtgatataaaagtagtttaaagtttgtatgattattcaaatttgttt 27890842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 27891103 - 27891053
Alignment:
Q  8 aatctcgcaaagatcgcaaatcatcctctggaatgagcggttcaccgaaga 58  Q
    |||||||| | ||||||||| ||||||||||||||||||||||| ||||||    
T  27891103 aatctcgccaggatcgcaaaacatcctctggaatgagcggttcatcgaaga 27891053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 312 - 427
Target Start/End: Original strand, 10902301 - 10902416
Alignment:
Q  312 ttggagtttggttaatctagatttagaattatgtttatgtcattttctatatagttttgtaaattaatcagtgatattaaactagtttaaagttttcatg 411  Q
    |||||||||| |||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||| |||| ||| ||||||||||||| ||||    
T  10902301 ttggagtttgcttaatctagatttagatttatgtttatgtgattttgtatatggttttgtaaattaatcagttatataaaagtagtttaaagtttccatg 10902400  T
Q  412 actatttaaatttgtt 427  Q
    |||||| |||||||||    
T  10902401 actattcaaatttgtt 10902416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 10902169 - 10902238
Alignment:
Q  14 gcaaagatcgcaaatcatcctctggaatgagcggttcaccgaagaaaggaggtcacggagggaagttcac 83  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||||||| ||| |||||||||||||    
T  10902169 gcaaagatcgcaaatcatcatcaggaatgagtggttcaccgaagaaaggaggccactgagggaagttcac 10902238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 10902267 - 10902302
Alignment:
Q  200 ccgccgctgttaccgtttgattgcggtggttgtgtt 235  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10902267 ccgccgcggttaccgtttgattgcggtggttgtgtt 10902302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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