View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21042_low_9 (Length: 484)
Name: NF21042_low_9
Description: NF21042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21042_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 269 - 480
Target Start/End: Original strand, 44228712 - 44228923
Alignment:
| Q |
269 |
tatggtgtagtttgcttgctggtatggtgggtcttcaatgctttgtctatgtttagccttttttccttcttctttgtatgaacctgttaaaaagtatagt |
368 |
Q |
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| T |
44228712 |
tatggtgtagtttgcttgctggtatggtgggtcttcaatgctttgtctatgtttagccttttttccttcttctttgtattaacctgttaaaaagtatagt |
44228811 |
T |
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| Q |
369 |
tttttgggtttgctaaaaaaggccaataggattgtaatgctctgcaatttgtgcacaggaaatcttactttccctctctatcttatgtgtaaagttaatt |
468 |
Q |
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| T |
44228812 |
tttttgggtttgctaaaaaaggccaataggattgtaatgctctgcaatttgtgcacaggaaatcttactttccctctctatcttatgtgtaaagttaatt |
44228911 |
T |
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| Q |
469 |
ttcatgtacaaa |
480 |
Q |
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| T |
44228912 |
ttcatgtacaaa |
44228923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 44229171 - 44228954
Alignment:
| Q |
18 |
atctccaatcaaagtaagaatttgataaatgaaacgtcaaaacatgtgttttggccaaatctagcagaaaagagaaatacaaataagaattgaagtacat |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
44229171 |
atctccaatcaaagtaagaatttgacaaatgaaacgtcaaaacatgtgttttggccaaataaagcagaaaagagaaatacaaataagaattgaagtatat |
44229072 |
T |
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| Q |
118 |
ccannnnnnnnnnnnnnnnnnngttattcactctctttagtaactacttagcagctaagactagttggccagctatagcacacttgcatgcatgtgaatt |
217 |
Q |
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| T |
44229071 |
ccatttttttcttttgctttt-gttattcactctctttagtaactacttagcagctaagactagttggccggctatagcacacttgcatgcatgtgaatt |
44228973 |
T |
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| Q |
218 |
agaaaaagcatgggcatgt |
236 |
Q |
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| T |
44228972 |
agaaaaagcatgggcatgt |
44228954 |
T |
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