View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21043_high_17 (Length: 400)

Name: NF21043_high_17
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21043_high_17
NF21043_high_17
[»] chr3 (26 HSPs)
chr3 (16-400)||(2789862-2790246)
chr3 (16-400)||(2796865-2797240)
chr3 (17-400)||(2748503-2748877)
chr3 (40-360)||(2806789-2807109)
chr3 (17-400)||(2856069-2856443)
chr3 (39-400)||(2768596-2768948)
chr3 (17-264)||(2838986-2839233)
chr3 (39-400)||(5412436-5412786)
chr3 (28-248)||(2818073-2818293)
chr3 (54-338)||(2758756-2759031)
chr3 (131-250)||(2755663-2755782)
chr3 (91-243)||(21936703-21936858)
chr3 (91-229)||(3200526-3200670)
chr3 (91-229)||(3357778-3357922)
chr3 (98-155)||(22104280-22104337)
chr3 (50-155)||(30990130-30990235)
chr3 (77-161)||(22621766-22621850)
chr3 (98-240)||(22178974-22179119)
chr3 (86-161)||(3280736-3280811)
chr3 (95-161)||(3221954-3222020)
chr3 (92-138)||(3311133-3311179)
chr3 (92-138)||(3322732-3322778)
chr3 (184-229)||(3221880-3221925)
chr3 (184-229)||(3280662-3280707)
chr3 (98-155)||(21945190-21945247)
chr3 (188-240)||(30990057-30990109)
[»] scaffold0691 (1 HSPs)
scaffold0691 (39-396)||(6415-6763)
[»] chr1 (4 HSPs)
chr1 (71-167)||(34975041-34975137)
chr1 (71-167)||(34979699-34979795)
chr1 (50-167)||(34988735-34988852)
chr1 (184-229)||(49386844-49386889)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 2789862 - 2790246
Alignment:
Q  16 atttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2789862 atttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagc 2789961  T
Q  116 attcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2789962 attcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcat 2790061  T
Q  216 ttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgcaagattgcaag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  2790062 ttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgccgtcaatctttattctgcaagattgcaag 2790161  T
Q  316 cctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaaga 400  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  2790162 cctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaaaga 2790246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 2796865 - 2797240
Alignment:
Q  16 atttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagc 115  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  2796865 atttgccctggggaaagtgtttgaattcctaaaagaagaaacaaatctgctgagtcgtgtgcacaaagatttttcagacatcacagatgaacttgagagc 2796964  T
Q  116 attcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcat 215  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2796965 attcaagttttcctcaaagatgcagatacaagagctgcagatgaaaccgacaccaatgatggaataagaacttgggtgaagcatctgagagaagcatcat 2797064  T
Q  216 ttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgcaagattgcaag 315  Q
    |||||||||||||| |||| ||||||||||||| ||| ||||||||||      || ||||| | |||||| |   |||| || ||||||||||||||||    
T  2797065 ttcgcattgaagatgtcattgatgaataccttcagctgatgcataggg------cctatcctccgggatgcgg---atctttagtctgcaagattgcaag 2797155  T
Q  316 cctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaaga 400  Q
     ||||||||||| |||||| ||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  2797156 tctaatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaaga 2797240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 2748503 - 2748877
Alignment:
Q  17 tttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagca 116  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||| |||||  |||| |||| |||||||| ||||||||||||||||||||||||||    
T  2748503 tttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttgagagca 2748602  T
Q  117 ttcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatt 216  Q
    ||||||||||||||||||||||||| | ||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  2748603 ttcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaataagaacttgggtgaagcagctgagagaagcatcatt 2748702  T
Q  217 tcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgcaagattgcaagc 316  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||||      |||||||| || ||||| |   |||| || || |||||||||||||     
T  2748703 tcgcattgaagatgtcattgatgaataccttcggctaatgcataggg------ccaatcctcctagatgcgg---atctttagtcggcaagattgcaagg 2748793  T
Q  317 ctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaaga 400  Q
    | |||||||||||||||||||| |||||| ||||| ||||| ||| || |||||||   |||||||||||||||||||||||||    
T  2748794 caaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaaga 2748877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 40 - 360
Target Start/End: Original strand, 2806789 - 2807109
Alignment:
Q  40 attcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgca 139  Q
    |||||||||||||||||||||||| || |  ||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2806789 attcctaaaagaagaaacaaatcttctaaaaggtgtacacacagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgca 2806888  T
Q  140 gatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgatg 239  Q
    |||| |||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||    
T  2806889 gatagaagagcagcagatgaagcagacacaaatgatggaattagaacttgggtaaagcagctgcgcgaagcatcatttcgcattgaagatatcatcgatg 2806988  T
Q  240 aataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgcaagattgcaagcctaatcaaaactttgattcccca 339  Q
    |||||| |||||| ||||||| ||||||||||| |||| |||||||| ||  ||||  ||||| |||||||||||||||  ||||||||||||||||||     
T  2806989 aataccatcggctgatgcatatggcaaaatccagtcctcctggatgcggtggatcttcattctacaagattgcaagcctggtcaaaactttgattccccg 2807088  T
Q  340 tcatcagatagcttctgagat 360  Q
    |||||| ||||| ||| ||||    
T  2807089 tcatcatatagcatctaagat 2807109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 2856443 - 2856069
Alignment:
Q  17 tttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagca 116  Q
    |||| |||||||||||||||  | |||||||||||||||||||||||  |||| ||||| |||| |||||||| ||||||||||||||||||||||||||    
T  2856443 tttgccctgggggaagtgttccagttcctaaaagaagaaacaaatcttttgagaggtgtacacagagatttttcagacatcaaagatgaacttgagagca 2856344  T
Q  117 ttcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatt 216  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2856343 ttcaagtcttcctcaaagatgcagacataagggctgcggatgaagcagacatcaatgatggaataagaacttgggtgaagcagctgagagaagcatcatt 2856244  T
Q  217 tcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgcaagattgcaagc 316  Q
    ||||||||||||| |||| ||||||||||||||| | || |||||||      ||||||||  ||||    ||  |||| || ||  |||| || |||||    
T  2856243 tcgcattgaagatgtcattgatgaataccttcggttgatacataggg------ccaatcctcatgga---cgtggatctttagtcaacaaggttacaagc 2856153  T
Q  317 ctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaaga 400  Q
    | ||||||||||||||||||||||||| | || || || |||||| || |||| |||   ||||||||||||||||||||||||    
T  2856152 cgaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaaga 2856069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 39 - 400
Target Start/End: Original strand, 2768596 - 2768948
Alignment:
Q  39 aattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 138  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2768596 aattcctaaaagaagaaacaaatctgctgagtggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 2768695  T
Q  139 agatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgat 238  Q
    ||| | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  2768696 agacagaagggctgcggatgaagcagacaccaacgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgat 2768795  T
Q  239 gaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgcaagattgcaagcctaatcaaaactttgattcccc 338  Q
    |||||||||||| | |  |||||||      |||||| | |  || || |   |||| || ||| ||||||||||||||||||||||||||||| |||||    
T  2768796 gaataccttcggttgacccataggg------ccaatcgtcccagacgcgg---atctttaatcttcaagattgcaagcctaatcaaaactttgactcccc 2768886  T
Q  339 atcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaaga 400  Q
     |||| | || || |  |||||| || ||||||||   ||||||||||||||||||||||||    
T  2768887 gtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaaga 2768948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 2839233 - 2838986
Alignment:
Q  17 tttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagca 116  Q
    |||| ||| |||||||||||  ||||||||||||||||||||||||| ||||| ||||| |||| |||||||| ||| ||||||||||||||||||| ||    
T  2839233 tttgccctaggggaagtgttcaaattcctaaaagaagaaacaaatcttctgagaggtgtacacagagatttttcagatatcaaagatgaacttgagatca 2839134  T
Q  117 ttcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatt 216  Q
    ||| ||||||||||||||||||||| | ||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2839133 ttctagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacatcaacgatggaataagaacttgggtgaagcagctgagagaagcatcatt 2839034  T
Q  217 tcgcattgaagatatcatcgatgaataccttcggctcatgcatagggc 264  Q
    ||||||||||||| |||| |||||||||||||| || |||||||||||    
T  2839033 tcgcattgaagatgtcattgatgaataccttcgactaatgcatagggc 2838986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 39 - 400
Target Start/End: Original strand, 5412436 - 5412786
Alignment:
Q  39 aattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 138  Q
    |||||||| |||||||||||||||  ||||  ||| |  ||| |||||||| |||||||||||||||||| || | |||||||  |||||||||||||||    
T  5412436 aattcctagaagaagaaacaaatcggctgaaaggtat--acacagatttttcagacatcaaagatgaactagaaatcattcaatccttcctcaaagatgc 5412533  T
Q  139 agatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgat 238  Q
    ||| | ||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| |||| ||     
T  5412534 agacaaaagggctgcagatgaagcggacgccaatgatggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatgtcattgac 5412633  T
Q  239 gaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgcaagattgcaagcctaatcaaaactttgattcccc 338  Q
    ||||||| |||||| ||||||||||       |||||||  |||||||||   |||| || ||||||||||||||||| | |||||||||||||||||||    
T  5412634 gaataccatcggctaatgcataggg------tcaatcctcttggatgcag---atctttagtctgcaagattgcaagcttgatcaaaactttgattcccc 5412724  T
Q  339 atcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaaga 400  Q
    ||||||||||||| ||||||||| || ||||||||   ||||||||||||||||||||||||    
T  5412725 atcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaaga 5412786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 2818073 - 2818293
Alignment:
Q  28 ggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttc 127  Q
    |||||||||  | |||||||||||||||||||| || ||||| ||||| |||| |||||||| |||||||||||||||||| || ||||| |||||||||    
T  2818073 ggaagtgtttcagttcctaaaagaagaaacaaagcttctgagaggtgtacacagagatttttcagacatcaaagatgaactagaaagcatccaagtcttc 2818172  T
Q  128 ctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaag 227  Q
    |||||||||||||||| ||| || ||||||||||| ||| ||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||    
T  2818173 ctcaaagatgcagatagaagggcagcagatgaagcggacgccaatgatggaataagaacatgggtgaagcaagtgagagatgcatcatttcgcattgaag 2818272  T
Q  228 atatcatcgatgaataccttc 248  Q
    || |||| |||||||||||||    
T  2818273 atgtcattgatgaataccttc 2818293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 54 - 338
Target Start/End: Original strand, 2758756 - 2759031
Alignment:
Q  54 aaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgc 153  Q
    |||||||||| || || ||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| || ||    
T  2758756 aaacaaatcttctaagaggtgtacacaaagatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagc 2758855  T
Q  154 agatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctc 253  Q
    |||||||||||| |||||||| ||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||| || || ||||||||||||||     
T  2758856 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctg 2758955  T
Q  254 atgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgcaagattgcaagcctaatcaaaactttgattcccc 338  Q
    || |||| ||      |||||||| ||||  || |   |||| |||||  ||||||| |||||| ||||||||||||||||||||    
T  2758956 atccatacgg------ccaatcctcctggtagcgg---atctgtattcaacaagattacaagcccaatcaaaactttgattcccc 2759031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 2755663 - 2755782
Alignment:
Q  131 aaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagata 230  Q
    |||| ||||||||||||||||| ||| ||| |  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||     
T  2755663 aaagttgcagatataagagctgaagaagaaaccaacaccaatgatggaataagaacttgggtgaagcatatgagagaagcatcatttcgcattgaagatg 2755762  T
Q  231 tcatcgatgaataccttcgg 250  Q
    |||| |||||||||||||||    
T  2755763 tcattgatgaataccttcgg 2755782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 21936703 - 21936858
Alignment:
Q  91 agacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaa---tgatggaataagaact 187  Q
    |||||| |||||||||||||| ||||| |||| |||||| || ||||| |||| ||||||||||| ||| | ||| | |||   ||| ||| | | ||||    
T  21936703 agacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcagctgatggagagaacaatagtgaaggagttaaaact 21936802  T
Q  188 tgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgatgaata 243  Q
    |||||||||||||| || |||||| | ||| |||| ||||||||||| ||||||||    
T  21936803 tgggtgaagcagcttagggaagcagctttttgcatagaagatatcattgatgaata 21936858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 3200526 - 3200670
Alignment:
Q  91 agacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagaca------ccaatgatggaataaga 184  Q
    |||||||||| |||||||||||||||||||||| |  ||||| |||||||| | ||  ||||| ||||||| ||         |||| || ||||| | |    
T  3200526 agacatcaaatatgaacttgagagcattcaagtttcactcaaggatgcagacacaaaggctgctgatgaaggaggaggaggagccaacgaaggaatcaaa 3200625  T
Q  185 acttgggtgaagcagctgagagaagcatcatttcgcattgaagat 229  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||    
T  3200626 acttgggtgaagcagctaagagaagcatcttttcgcatagaagat 3200670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 3357922 - 3357778
Alignment:
Q  91 agacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagaca------ccaatgatggaataaga 184  Q
    ||||||||||||||||||||||| ||| ||| |||  ||||| |||||||| | ||| ||||| ||||||| ||         |||| || ||||| | |    
T  3357922 agacatcaaagatgaacttgagatcatccaattctcactcaaggatgcagacacaagggctgctgatgaaggaggaggaggagccaacgaaggaatcaaa 3357823  T
Q  185 acttgggtgaagcagctgagagaagcatcatttcgcattgaagat 229  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||    
T  3357822 acttgggtgaagcagctaagagaagcatcttttcgcatagaagat 3357778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 22104280 - 22104337
Alignment:
Q  98 aaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcag 155  Q
    |||||||||||||| ||||| |||| ||||||||||||||| |||| |||||||||||    
T  22104280 aaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcag 22104337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 30990235 - 30990130
Alignment:
Q  50 gaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagag 149  Q
    |||||| | ||||| || || ||||| ||||| || |||| ||| || |||||||||||||| |||||||||| ||| || |||||||| |||| |||||    
T  30990235 gaagaagccaatctgctaagaggtgttcacaaggaattttcagatattaaagatgaacttgaaagcattcaagcctttcttaaagatgctgataaaagag 30990136  T
Q  150 ctgcag 155  Q
    ||||||    
T  30990135 ctgcag 30990130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 22621850 - 22621766
Alignment:
Q  77 cacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaag 161  Q
    |||||||| |||  |||||| |||||||||||||| ||||| |||| |||||| || ||||| |||| ||||||||||| |||||    
T  22621850 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 22621766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 22178974 - 22179119
Alignment:
Q  98 aaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcag---acaccaatgatggaataagaacttgggtga 194  Q
    ||||||||| |||| ||||| |||| ||||||||||||||| |||| ||||||||||| ||| | ||   |||| | ||| ||| | | ||| |||||||    
T  22178974 aaagatgaatttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcagctgatggagacaacactagtgaaggagtcaaaacatgggtga 22179073  T
Q  195 agcagctgagagaagcatcatttcgcattgaagatatcatcgatga 240  Q
    |||| || || | |||| | |||||||| ||||||||||| |||||    
T  22179074 agcaacttagggtagcagcttttcgcatagaagatatcattgatga 22179119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 3280811 - 3280736
Alignment:
Q  86 tttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaag 161  Q
    |||| ||| |||||| ||||||||||||||||  |||  || ||||| |||||||||| ||||||||| |||||||    
T  3280811 ttttaagagatcaaacatgaacttgagagcatcaaagcttttctcaaggatgcagatacaagagctgctgatgaag 3280736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 3222020 - 3221954
Alignment:
Q  95 atcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaag 161  Q
    |||||| ||||||||||||||||  |||  || ||||| |||||||||| ||||||||| |||||||    
T  3222020 atcaaacatgaacttgagagcatcaaagcttttctcaaggatgcagatacaagagctgctgatgaag 3221954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 3311179 - 3311133
Alignment:
Q  92 gacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 138  Q
    |||||||||||||| ||||||||||| |||| ||||||||| |||||    
T  3311179 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgc 3311133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 3322778 - 3322732
Alignment:
Q  92 gacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 138  Q
    |||||||||||||| ||||||||||| |||| ||||||||| |||||    
T  3322778 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgc 3322732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 3221925 - 3221880
Alignment:
Q  184 aacttgggtgaagcagctgagagaagcatcatttcgcattgaagat 229  Q
    |||||||||||||||||| ||||||||||| |||| ||| ||||||    
T  3221925 aacttgggtgaagcagctaagagaagcatcttttcacatagaagat 3221880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 3280707 - 3280662
Alignment:
Q  184 aacttgggtgaagcagctgagagaagcatcatttcgcattgaagat 229  Q
    |||||||||||||||||| ||||||||||| ||||| || ||||||    
T  3280707 aacttgggtgaagcagctaagagaagcatcttttcgtatagaagat 3280662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 21945190 - 21945247
Alignment:
Q  98 aaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcag 155  Q
    |||||||||||||| ||||||||||  |||||||| ||||| |||| |||||| ||||    
T  21945190 aaagatgaacttgaaagcattcaagcattcctcaaggatgctgataaaagagcagcag 21945247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 30990109 - 30990057
Alignment:
Q  188 tgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgatga 240  Q
    |||||||||||| | || |||||| | |||||||| |||||||||||||||||    
T  30990109 tgggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatga 30990057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 39 - 396
Target Start/End: Complemental strand, 6763 - 6415
Alignment:
Q  39 aattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 138  Q
    ||||||||||| ||||||||||||| ||||| ||||| |||| |||||||  ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  6763 aattcctaaaaaaagaaacaaatcttctgagaggtgtacacacagattttacagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgc 6664  T
Q  139 agatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgat 238  Q
    ||| | ||  |||||||||||||||||||| |||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| | || |||    
T  6663 agacagaaaggctgcagatgaagcagacactaatgatggaataagaacttgggtgaagcatatgagggaagcatcatttcgcattgaagatgttattgat 6564  T
Q  239 gaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgcaagattgcaagcctaatcaaaactttgattcccc 338  Q
    |||||||||||||| || |||||||      |||| ||| |||||||| |   |||  || |||||||||||| |||||||||||||||||||||| | |    
T  6563 gaataccttcggctgatccataggg------ccaaccctcctggatgcgg---atcattagtctgcaagattgtaagcctaatcaaaactttgatttctc 6473  T
Q  339 atcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaagga 396  Q
    | ||||||||||| ||||||||| || |||| |||   ||||||||||||||||||||    
T  6472 agcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaagga 6415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 34975041 - 34975137
Alignment:
Q  71 ggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagaca 167  Q
    ||||| |||||||| |||  |||||| ||| ||||||| || |||||||||| ||||||||||||| | |||| ||||||||||| ||||| |||||    
T  34975041 ggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagattctgatagaagagctgcagctgaaggagaca 34975137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 34979699 - 34979795
Alignment:
Q  71 ggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagaca 167  Q
    ||||| |||||||| |||  |||||| ||| ||||||| || |||||| ||| |||||| |||||||| |||| ||||||||||| ||||| |||||    
T  34979699 ggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattgaagccttccttaaagatgctgatagaagagctgcagctgaaggagaca 34979795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 34988735 - 34988852
Alignment:
Q  50 gaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagag 149  Q
    |||||||| || || ||||  ||||| |||||||| |||  |||||| ||| ||||||| || ||||| |||  ||||||  ||||||| |||| |||||    
T  34988735 gaagaaaccaaactactgaaaggtgttcacaaagaatttgcagacattaaatatgaactggaaagcatccaaaccttccttgaagatgctgatagaagag 34988834  T
Q  150 ctgcagatgaagcagaca 167  Q
    |||||| ||||| |||||    
T  34988835 ctgcagctgaaggagaca 34988852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 49386889 - 49386844
Alignment:
Q  184 aacttgggtgaagcagctgagagaagcatcatttcgcattgaagat 229  Q
    ||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  49386889 aacttgggtgaagtagcttagagaagcatcttttcgcatagaagat 49386844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University